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5IT9
Asym. Unit
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Asym.Unit (1.6 MB)
Biol.Unit 1, α-C (1.5 MB)
Biol.Unit 1 (1.5 MB)
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(1)
Title
:
STRUCTURE OF THE YEAST KLUYVEROMYCES LACTIS SMALL RIBOSOMAL SUBUNIT IN COMPLEX WITH THE CRICKET PARALYSIS VIRUS IRES.
Authors
:
J. Murray, C. G. Savva, B. S. Shin, T. E. Dever, V. Ramakrishnan, I. S. Fer
Date
:
16 Mar 16 (Deposition) - 18 May 16 (Release) - 18 May 16 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
3.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,i,2
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,i,2 (1x)
Keywords
:
Ires, Ribosome, Small, Subunit
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Murray, C. G. Savva, B. S. Shin, T. E. Dever, V. Ramakrishnan, I. S. Fernandez
Structural Characterization Of Ribosome Recruitment And Translocation By Type Iv Ires.
Elife V. 5 2016
[
close entry info
]
Hetero Components
(2, 83)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1aa: MAGNESIUM ION (MGaa)
1ab: MAGNESIUM ION (MGab)
1ac: MAGNESIUM ION (MGac)
1ad: MAGNESIUM ION (MGad)
1ae: MAGNESIUM ION (MGae)
1af: MAGNESIUM ION (MGaf)
1ag: MAGNESIUM ION (MGag)
1ah: MAGNESIUM ION (MGah)
1ai: MAGNESIUM ION (MGai)
1aj: MAGNESIUM ION (MGaj)
1ak: MAGNESIUM ION (MGak)
1al: MAGNESIUM ION (MGal)
1am: MAGNESIUM ION (MGam)
1an: MAGNESIUM ION (MGan)
1ao: MAGNESIUM ION (MGao)
1ap: MAGNESIUM ION (MGap)
1aq: MAGNESIUM ION (MGaq)
1ar: MAGNESIUM ION (MGar)
1as: MAGNESIUM ION (MGas)
1at: MAGNESIUM ION (MGat)
1au: MAGNESIUM ION (MGau)
1av: MAGNESIUM ION (MGav)
1aw: MAGNESIUM ION (MGaw)
1ax: MAGNESIUM ION (MGax)
1ay: MAGNESIUM ION (MGay)
1az: MAGNESIUM ION (MGaz)
1b: MAGNESIUM ION (MGb)
1ba: MAGNESIUM ION (MGba)
1bb: MAGNESIUM ION (MGbb)
1bc: MAGNESIUM ION (MGbc)
1bd: MAGNESIUM ION (MGbd)
1be: MAGNESIUM ION (MGbe)
1bf: MAGNESIUM ION (MGbf)
1bg: MAGNESIUM ION (MGbg)
1bh: MAGNESIUM ION (MGbh)
1bi: MAGNESIUM ION (MGbi)
1bj: MAGNESIUM ION (MGbj)
1bk: MAGNESIUM ION (MGbk)
1bl: MAGNESIUM ION (MGbl)
1bm: MAGNESIUM ION (MGbm)
1bn: MAGNESIUM ION (MGbn)
1bo: MAGNESIUM ION (MGbo)
1bp: MAGNESIUM ION (MGbp)
1bq: MAGNESIUM ION (MGbq)
1br: MAGNESIUM ION (MGbr)
1bs: MAGNESIUM ION (MGbs)
1bt: MAGNESIUM ION (MGbt)
1bu: MAGNESIUM ION (MGbu)
1bv: MAGNESIUM ION (MGbv)
1bw: MAGNESIUM ION (MGbw)
1bx: MAGNESIUM ION (MGbx)
1by: MAGNESIUM ION (MGby)
1bz: MAGNESIUM ION (MGbz)
1c: MAGNESIUM ION (MGc)
1ca: MAGNESIUM ION (MGca)
1cb: MAGNESIUM ION (MGcb)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
1s: MAGNESIUM ION (MGs)
1t: MAGNESIUM ION (MGt)
1u: MAGNESIUM ION (MGu)
1v: MAGNESIUM ION (MGv)
1w: MAGNESIUM ION (MGw)
1x: MAGNESIUM ION (MGx)
1y: MAGNESIUM ION (MGy)
1z: MAGNESIUM ION (MGz)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
80
Ligand/Ion
MAGNESIUM ION
2
ZN
3
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(75, 75)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
58: AI4 (SOFTWARE)
59: AI5 (SOFTWARE)
60: AI6 (SOFTWARE)
61: AI7 (SOFTWARE)
62: AI8 (SOFTWARE)
63: AI9 (SOFTWARE)
64: AJ1 (SOFTWARE)
65: AJ2 (SOFTWARE)
66: AJ3 (SOFTWARE)
67: AJ4 (SOFTWARE)
68: AJ5 (SOFTWARE)
69: AJ6 (SOFTWARE)
70: AJ7 (SOFTWARE)
71: AJ8 (SOFTWARE)
72: AJ9 (SOFTWARE)
73: AK1 (SOFTWARE)
74: AK2 (SOFTWARE)
75: AK3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
C 2:267 , GLN G:176
binding site for residue MG G 301
02
AC2
SOFTWARE
A 2:1467 , ASN T:85
binding site for residue MG T 201
03
AC3
SOFTWARE
G 2:576 , PRO X:64 , U i:6216
binding site for residue MG X 201
04
AC4
SOFTWARE
CYS a:23 , CYS a:26 , CYS a:74 , CYS a:77
binding site for residue ZN a 201
05
AC5
SOFTWARE
CYS b:40 , CYS b:56 , SER b:58 , CYS b:59
binding site for residue ZN b 101
06
AC6
SOFTWARE
CYS f:121 , CYS f:139 , CYS f:142
binding site for residue ZN f 501
07
AC7
SOFTWARE
A 2:940 , HIS a:17
binding site for residue MG 2 1801
08
AC8
SOFTWARE
A 2:359 , G 2:361
binding site for residue MG 2 1802
09
AC9
SOFTWARE
A 2:93 , G 2:95 , G 2:402 , ARG E:3
binding site for residue MG 2 1803
10
AD1
SOFTWARE
G 2:551 , A 2:554 , A 2:555
binding site for residue MG 2 1804
11
AD2
SOFTWARE
A 2:100
binding site for residue MG 2 1805
12
AD3
SOFTWARE
G 2:623 , A 2:1024
binding site for residue MG 2 1806
13
AD4
SOFTWARE
C 2:49 , A 2:424
binding site for residue MG 2 1808
14
AD5
SOFTWARE
A 2:992 , A 2:1004 , G 2:1776
binding site for residue MG 2 1809
15
AD6
SOFTWARE
A 2:1328 , G 2:1329 , C 2:1418 , SER D:160
binding site for residue MG 2 1810
16
AD7
SOFTWARE
U 2:9
binding site for residue MG 2 1811
17
AD8
SOFTWARE
A 2:928 , A 2:929 , C 2:930 , U 2:944
binding site for residue MG 2 1812
18
AD9
SOFTWARE
A 2:1761 , G 2:1765 , G 2:1766 , U 2:1768 , U 2:1769
binding site for residue MG 2 1813
19
AE1
SOFTWARE
G 2:547
binding site for residue MG 2 1814
20
AE2
SOFTWARE
A 2:400 , LYS I:23
binding site for residue MG 2 1815
21
AE3
SOFTWARE
G 2:16 , G 2:609
binding site for residue MG 2 1816
22
AE4
SOFTWARE
A 2:377 , U 2:378
binding site for residue MG 2 1817
23
AE5
SOFTWARE
A 2:28
binding site for residue MG 2 1818
24
AE6
SOFTWARE
G 2:370 , A 2:604 , G 2:606
binding site for residue MG 2 1819
25
AE7
SOFTWARE
U 2:995 , G 2:996
binding site for residue MG 2 1820
26
AE8
SOFTWARE
C 2:426 , G 2:428
binding site for residue MG 2 1821
27
AE9
SOFTWARE
A 2:43 , U 2:44 , A 2:47
binding site for residue MG 2 1822
28
AF1
SOFTWARE
U 2:1759 , A 2:1760 , A 2:1761 , G 2:1765 , G 2:1766
binding site for residue MG 2 1823
29
AF2
SOFTWARE
U 2:617 , A 2:618 , A 2:619 , A 2:620
binding site for residue MG 2 1824
30
AF3
SOFTWARE
A 2:579
binding site for residue MG 2 1825
31
AF4
SOFTWARE
A 2:618 , A 2:1029
binding site for residue MG 2 1826
32
AF5
SOFTWARE
G 2:1327 , G 2:1329
binding site for residue MG 2 1827
33
AF6
SOFTWARE
A 2:622
binding site for residue MG 2 1828
34
AF7
SOFTWARE
A 2:100 , U 2:101 , U 2:102 , C 2:360
binding site for residue MG 2 1829
35
AF8
SOFTWARE
G 2:1108 , G 2:1109
binding site for residue MG 2 1831
36
AF9
SOFTWARE
U 2:1768 , A 2:1792
binding site for residue MG 2 1832
37
AG1
SOFTWARE
G 2:95
binding site for residue MG 2 1833
38
AG2
SOFTWARE
U 2:1726
binding site for residue MG 2 1834
39
AG3
SOFTWARE
G 2:1627 , U 2:1628 , G 2:1791 , A 2:1792 , MET a:1
binding site for residue MG 2 1835
40
AG4
SOFTWARE
A 2:459 , G 2:460
binding site for residue MG 2 1836
41
AG5
SOFTWARE
G 2:466
binding site for residue MG 2 1837
42
AG6
SOFTWARE
A 2:1415
binding site for residue MG 2 1838
43
AG7
SOFTWARE
A 2:549 , C 2:582
binding site for residue MG 2 1839
44
AG8
SOFTWARE
A 2:991 , C 2:1009 , G 2:1010
binding site for residue MG 2 1840
45
AG9
SOFTWARE
U 2:1302
binding site for residue MG 2 1841
46
AH1
SOFTWARE
A 2:978
binding site for residue MG 2 1842
47
AH2
SOFTWARE
G 2:57 , U 2:58
binding site for residue MG 2 1843
48
AH3
SOFTWARE
A 2:760 , G 2:761
binding site for residue MG 2 1844
49
AH4
SOFTWARE
G 2:1139
binding site for residue MG 2 1845
50
AH5
SOFTWARE
G 2:34
binding site for residue MG 2 1846
51
AH6
SOFTWARE
G 2:1293
binding site for residue MG 2 1847
52
AH7
SOFTWARE
U 2:988
binding site for residue MG 2 1849
53
AH8
SOFTWARE
A 2:212
binding site for residue MG 2 1850
54
AH9
SOFTWARE
G 2:336
binding site for residue MG 2 1851
55
AI1
SOFTWARE
G 2:382
binding site for residue MG 2 1853
56
AI2
SOFTWARE
G 2:1392
binding site for residue MG 2 1854
57
AI3
SOFTWARE
C 2:1158 , A 2:1192 , U 2:1282
binding site for residue MG 2 1855
58
AI4
SOFTWARE
G 2:1175 , A 2:1201 , C 2:1455
binding site for residue MG 2 1857
59
AI5
SOFTWARE
G 2:1200 , A 2:1598 , C 2:1600
binding site for residue MG 2 1858
60
AI6
SOFTWARE
U 2:1430
binding site for residue MG 2 1859
61
AI7
SOFTWARE
A 2:1195 , C 2:1196 , C 2:1463 , U 2:1601
binding site for residue MG 2 1860
62
AI8
SOFTWARE
G 2:1267 , U 2:1268
binding site for residue MG 2 1861
63
AI9
SOFTWARE
G 2:1272 , C 2:1273 , G 2:1426
binding site for residue MG 2 1862
64
AJ1
SOFTWARE
G 2:1537 , G 2:1539
binding site for residue MG 2 1863
65
AJ2
SOFTWARE
U 2:1515 , U 2:1520
binding site for residue MG 2 1864
66
AJ3
SOFTWARE
C 2:1273 , G 2:1426 , G 2:1427
binding site for residue MG 2 1865
67
AJ4
SOFTWARE
A 2:1201 , A 2:1202
binding site for residue MG 2 1866
68
AJ5
SOFTWARE
U 2:512 , G 2:513
binding site for residue MG 2 1867
69
AJ6
SOFTWARE
U 2:118 , A 2:119
binding site for residue MG 2 1869
70
AJ7
SOFTWARE
C 2:249 , A 2:250 , U 2:251
binding site for residue MG 2 1870
71
AJ8
SOFTWARE
C 2:423
binding site for residue MG 2 1871
72
AJ9
SOFTWARE
A 2:603
binding site for residue MG 2 1872
73
AK1
SOFTWARE
A 2:634 , A 2:635 , A 2:805
binding site for residue MG 2 1873
74
AK2
SOFTWARE
C 2:626 , U 2:967
binding site for residue MG 2 1874
75
AK3
SOFTWARE
A 2:970 , G 2:971
binding site for residue MG 2 1875
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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