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5INR
Asym. Unit
Info
Asym.Unit (435 KB)
Biol.Unit 1 (427 KB)
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(1)
Title
:
A C69-FAMILY CYSTEINE DIPEPTIDASE IN COMPLEX WITH ALA-PRO FROM LACTOBACILLUS FARCIMINIS
Authors
:
R. Kono, K. Watanabe
Date
:
07 Mar 16 (Deposition) - 15 Mar 17 (Release) - 15 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
C69 Family, Cysteine Dipeptidase, Ntn Hydrolase, Lactobacillus Farciminis, Gly-Pro, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Kono, K. Watanabe
A C69-Family Cysteine Dipeptidase From Lactobacillus Farciminis; Substrate Recognition Mechanism And Autoproteolytic Mechanism In Enzyme Maturation
To Be Published
[
close entry info
]
Hetero Components
(4, 46)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: ALANINE (ALAa)
2b: ALANINE (ALAb)
2c: ALANINE (ALAc)
2d: ALANINE (ALAd)
2e: ALANINE (ALAe)
3a: 1,2-ETHANEDIOL (EDOa)
3aa: 1,2-ETHANEDIOL (EDOaa)
3ab: 1,2-ETHANEDIOL (EDOab)
3ac: 1,2-ETHANEDIOL (EDOac)
3ad: 1,2-ETHANEDIOL (EDOad)
3ae: 1,2-ETHANEDIOL (EDOae)
3af: 1,2-ETHANEDIOL (EDOaf)
3ag: 1,2-ETHANEDIOL (EDOag)
3ah: 1,2-ETHANEDIOL (EDOah)
3ai: 1,2-ETHANEDIOL (EDOai)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
4a: PROLINE (PROa)
4b: PROLINE (PROb)
4c: PROLINE (PROc)
4d: PROLINE (PROd)
4e: PROLINE (PROe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
ALA
5
Mod. Amino Acid
ALANINE
3
EDO
35
Ligand/Ion
1,2-ETHANEDIOL
4
PRO
5
Mod. Amino Acid
PROLINE
[
close Hetero Component info
]
Sites
(41, 41)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:300 , ASP A:391 , TYR A:392 , ASP A:393 , HOH A:609 , HOH A:779 , LYS D:462
binding site for residue EDO A 503
02
AC2
SOFTWARE
ASN A:375 , PHE A:443 , ASN A:447 , HOH A:740 , ASP D:373 , LEU D:374 , ASN D:375
binding site for residue EDO A 504
03
AC3
SOFTWARE
GLY A:451 , ASP A:452 , THR A:455 , HOH A:611 , HOH A:841 , GLY D:370 , TRP D:379
binding site for residue EDO A 505
04
AC4
SOFTWARE
ASN A:105 , SER A:106 , HOH A:765 , LEU B:404
binding site for residue EDO A 506
05
AC5
SOFTWARE
ALA A:236 , HOH A:729 , HOH A:846 , HOH A:862 , HOH A:985 , ASP B:283
binding site for residue EDO A 507
06
AC6
SOFTWARE
ASP A:283 , HOH A:700 , HOH A:935 , ALA E:236
binding site for residue EDO A 508
07
AC7
SOFTWARE
ARG A:107 , ARG A:230 , HIS A:231 , GLY A:234 , SER A:235 , ALA A:236 , HOH A:797 , HOH A:801
binding site for residue EDO A 509
08
AC8
SOFTWARE
ARG A:70 , ILE A:89 , ASN A:90 , SER A:91 , ALA A:356 , ASN A:357 , HOH A:617
binding site for residue EDO A 510
09
AC9
SOFTWARE
ASP A:373 , LEU A:374 , ASN A:375 , HOH A:628 , ASN D:375 , PHE D:443 , ASN D:447
binding site for residue EDO A 511
10
AD1
SOFTWARE
TYR B:300 , ASP B:391 , TYR B:392 , ASP B:393 , HOH B:607 , HOH B:796
binding site for residue EDO B 503
11
AD2
SOFTWARE
ASN B:105 , SER B:106 , HOH B:759 , HOH B:857
binding site for residue EDO B 504
12
AD3
SOFTWARE
GLY B:370 , TRP B:379 , GLY B:451 , ASP B:452 , THR B:455 , HOH B:649 , HOH B:663
binding site for residue EDO B 505
13
AD4
SOFTWARE
ASP B:391 , TYR B:395 , GLY B:457 , ASN B:460 , HOH B:651 , HOH B:769
binding site for residue EDO B 506
14
AD5
SOFTWARE
ARG B:107 , ARG B:230 , HIS B:231 , GLY B:234 , SER B:235 , ALA B:236 , HOH B:679
binding site for residue EDO B 507
15
AD6
SOFTWARE
GLN B:267 , HOH B:628 , HOH B:710
binding site for residue EDO B 508
16
AD7
SOFTWARE
ARG B:70 , ILE B:89 , ASN B:90 , SER B:91 , ALA B:356 , ASN B:357 , HOH B:716
binding site for residue EDO B 509
17
AD8
SOFTWARE
TYR C:300 , ASP C:391 , TYR C:392 , ASP C:393 , HOH C:793 , LYS E:462
binding site for residue EDO C 503
18
AD9
SOFTWARE
ARG C:464 , ASN C:466 , HOH C:671 , HOH C:885
binding site for residue EDO C 504
19
AE1
SOFTWARE
ASP C:391 , TYR C:395 , GLY C:457 , ASN C:460 , HOH C:632 , HOH C:905 , HOH E:666
binding site for residue EDO C 505
20
AE2
SOFTWARE
GLY C:451 , ASP C:452 , THR C:455 , HOH C:664 , HOH C:900 , GLY E:370 , TRP E:379
binding site for residue EDO C 506
21
AE3
SOFTWARE
ARG C:70 , ILE C:89 , ASN C:90 , SER C:91 , ALA C:356 , ASN C:357 , VAL C:358 , HOH C:607
binding site for residue EDO C 507
22
AE4
SOFTWARE
ARG C:107 , ARG C:230 , HIS C:231 , GLY C:234 , SER C:235 , ALA C:236 , HOH C:687
binding site for residue EDO C 508
23
AE5
SOFTWARE
HOH A:615 , TYR D:300 , ASP D:391 , TYR D:392 , ASP D:393 , HOH D:608 , HOH D:815
binding site for residue EDO D 503
24
AE6
SOFTWARE
ASP D:391 , TYR D:395 , GLY D:457 , ASN D:460 , HOH D:637 , HOH D:800
binding site for residue EDO D 504
25
AE7
SOFTWARE
ARG D:107 , ARG D:230 , HIS D:231 , GLY D:234 , SER D:235 , ALA D:236 , HOH D:682
binding site for residue EDO D 505
26
AE8
SOFTWARE
ARG D:70 , ILE D:89 , ASN D:90 , SER D:91 , ALA D:356 , ASN D:357 , HOH D:782
binding site for residue EDO D 506
27
AE9
SOFTWARE
GLY A:370 , TRP A:379 , GLY D:451 , ASP D:452 , THR D:455 , HOH D:619 , HOH D:630 , HOH D:793
binding site for residue EDO D 507
28
AF1
SOFTWARE
ASP A:391 , TYR A:395 , GLY A:457 , ASN A:460 , HOH D:632 , HOH D:638 , HOH D:957
binding site for residue EDO D 508
29
AF2
SOFTWARE
LYS C:462 , TYR E:300 , ASP E:391 , TYR E:392 , ASP E:393 , HOH E:614 , HOH E:780
binding site for residue EDO E 503
30
AF3
SOFTWARE
GLY C:370 , TRP C:379 , GLY E:451 , ASP E:452 , THR E:455 , HOH E:613 , HOH E:821
binding site for residue EDO E 504
31
AF4
SOFTWARE
VAL E:179 , GLN E:197 , ASP E:199 , THR E:205 , HOH E:647 , HOH E:669 , HOH E:815 , HOH E:896
binding site for residue EDO E 505
32
AF5
SOFTWARE
HOH C:652 , ASP E:391 , TYR E:395 , GLY E:457 , ASN E:460 , HOH E:652 , HOH E:864
binding site for residue EDO E 506
33
AF6
SOFTWARE
ARG E:107 , ARG E:230 , HIS E:231 , GLY E:234 , SER E:235 , ALA E:236 , HOH E:705
binding site for residue EDO E 507
34
AF7
SOFTWARE
ARG A:411 , ASN A:415 , ARG E:107 , ASN E:218 , HOH E:658
binding site for residue EDO E 508
35
AF8
SOFTWARE
ASN C:375 , PHE C:443 , ASN C:447 , ASP E:373 , LEU E:374 , ASN E:375
binding site for residue EDO E 509
36
AF9
SOFTWARE
ASP C:373 , LEU C:374 , ASN C:375 , LEU E:374 , ASN E:375 , ASN E:447
binding site for residue ACT E 510
37
AG1
SOFTWARE
CYS A:9 , ASP A:31 , THR A:99 , THR A:101 , GLU A:121 , ASN A:191 , TYR A:243 , ARG A:312 , ARG A:318 , HOH A:991
binding site for Di-peptide ALA A 501 and PRO A 502
38
AG2
SOFTWARE
CYS B:9 , ASP B:31 , THR B:99 , THR B:101 , GLU B:121 , ASN B:191 , TYR B:243 , ARG B:312 , ARG B:318 , HOH B:913 , HOH B:917
binding site for Di-peptide ALA B 501 and PRO B 502
39
AG3
SOFTWARE
CYS C:9 , ASP C:31 , THR C:99 , THR C:101 , GLU C:121 , ASN C:191 , TYR C:243 , ARG C:312 , ARG C:318 , HOH C:638 , HOH C:868
binding site for Di-peptide ALA C 501 and PRO C 502
40
AG4
SOFTWARE
CYS D:9 , ASP D:31 , THR D:99 , THR D:101 , GLU D:121 , ASN D:191 , TYR D:243 , ARG D:312 , ARG D:318 , HOH D:610 , HOH D:659 , HOH D:951
binding site for Di-peptide ALA D 501 and PRO D 502
41
AG5
SOFTWARE
CYS E:9 , THR E:99 , THR E:101 , GLU E:121 , ASN E:191 , TYR E:243 , ARG E:312 , ARG E:318 , HOH E:748
binding site for Di-peptide ALA E 501 and PRO E 502
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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