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5INE
Asym. Unit
Info
Asym.Unit (280 KB)
Biol.Unit 1 (269 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PREFUSION GLYCOPROTEIN OF LCMV
Authors
:
K. M. Hastie, E. O. Saphire
Date
:
07 Mar 16 (Deposition) - 20 Apr 16 (Release) - 22 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Arenavirus, Lcmv, Glycoprotein, Pre-Fusion, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. M. Hastie, S. Igonet, B. M. Sullivan, P. Legrand, M. A. Zandonatti, J. E. Robinson, R. F. Garry, F. A. Rey, M. B. Oldstone, E. O. Saphire
Crystal Structure Of The Prefusion Surface Glycoprotein Of The Prototypic Arenavirus Lcmv.
Nat. Struct. Mol. Biol. V. 23 513 2016
[
close entry info
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Hetero Components
(3, 45)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
11
Ligand/Ion
BETA-D-MANNOSE
2
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
29
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:82 , ASN A:85 , GLY A:104 , SER A:105 , TRP A:289
binding site for Poly-Saccharide residues NAG A 518 through BMA A 520 bound to ASN A 85
02
AC2
SOFTWARE
ASN A:95 , SER A:97 , ARG A:233 , GLN A:334
binding site for Poly-Saccharide residues NAG A 501 through MAN A 504 bound to ASN A 95
03
AC3
SOFTWARE
ASN A:114 , SER A:224 , GLN A:226
binding site for Poly-Saccharide residues NAG A 505 through MAN A 508 bound to ASN A 114
04
AC4
SOFTWARE
ASN A:124 , THR B:271
binding site for Mono-Saccharide NAG A 509 bound to ASN A 124
05
AC5
SOFTWARE
LEU A:118 , ASN A:121 , ASN A:171 , SER A:173 , TYR A:227
binding site for Poly-Saccharide residues NAG A 510 through NAG A 511 bound to ASN A 171
06
AC6
SOFTWARE
ASN A:163 , ASN A:164 , ASN A:232 , THR A:234
binding site for Poly-Saccharide residues NAG A 512 through BMA A 514 bound to ASN A 232
07
AC7
SOFTWARE
LYS A:202 , ARG A:240 , ALA A:242 , ASN A:371 , SER A:373 , VAL A:394 , GLY A:397 , TYR A:399
binding site for Poly-Saccharide residues NAG A 515 through BMA A 517 bound to ASN A 371
08
AC8
SOFTWARE
ASN A:396
binding site for Mono-Saccharide NAG A 521 bound to ASN A 396
09
AC9
SOFTWARE
ASN A:401 , GLU A:402
binding site for Mono-Saccharide NAG A 522 bound to ASN A 401
10
AD1
SOFTWARE
SER B:82 , ASN B:85 , GLY B:104 , SER B:105 , TRP B:289
binding site for Poly-Saccharide residues NAG B 501 through BMA B 503 bound to ASN B 85
11
AD2
SOFTWARE
ASN B:95 , SER B:97 , ARG B:233
binding site for Poly-Saccharide residues NAG B 504 through MAN B 507 bound to ASN B 95
12
AD3
SOFTWARE
ASN B:114 , SER B:224 , GLN B:226
binding site for Poly-Saccharide residues NAG B 508 through BMA B 510 bound to ASN B 114
13
AD4
SOFTWARE
THR A:271 , GLU A:279 , ASN A:308 , ASN B:124
binding site for Mono-Saccharide NAG B 511 bound to ASN B 124
14
AD5
SOFTWARE
LEU B:118 , ASN B:121 , ASN B:171 , SER B:173 , TYR B:227
binding site for Poly-Saccharide residues NAG B 512 through BMA B 514 bound to ASN B 171
15
AD6
SOFTWARE
ASN B:163 , ASN B:164 , ASN B:232 , THR B:234
binding site for Poly-Saccharide residues NAG B 515 through MAN B 518 bound to ASN B 232
16
AD7
SOFTWARE
ARG B:240 , ALA B:242 , ASN B:371 , SER B:373 , VAL B:394 , GLY B:397 , TYR B:399
binding site for Poly-Saccharide residues NAG B 519 through MAN B 522 bound to ASN B 371
17
AD8
SOFTWARE
ASN B:401 , GLU B:402
binding site for Mono-Saccharide NAG B 523 bound to ASN B 401
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (280 KB)
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