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Asym. Unit
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Asym.Unit (276 KB)
Biol.Unit 1 (267 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GDP-MANNOSE 4,6 DEHYDRATASE IN COMPLEX WITH NATURAL INHIBITOR GDP-FUCOSE
Authors
:
E. A. Sickmier
Date
:
07 Mar 16 (Deposition) - 17 Aug 16 (Release) - 02 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Gdp-Mannose 4, 6 Dehydratase, Fucosylation, Lyase-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. G. Allen, M. Mujacic, M. J. Frohn, A. J. Pickrell, P. Kodama, D. Bagal T. San Miguel, E. A. Sickmier, S. Osgood, A. Swietlow, V. Li, J. B. Jordan, K. W. Kim, A. C. Rousseau, Y. J. Kim, S. Caille, M. Achmatowicz, O. Thiel, C. H. Fotsch, P. Reddy, J. D. Mccarter
Facile Modulation Of Antibody Fucosylation With Small Molecule Fucostatin Inhibitors And Cocrystal Structure With Gdp-Mannose 4, 6-Dehydratase.
Acs Chem. Biol. V. 11 2734 2016
[
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
1c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
1d: GUANOSINE-5'-DIPHOSPHATE (GDPd)
2a: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBa)
2b: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBb)
2c: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBc)
2d: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBd)
3a: GLYCEROL (GOLa)
4a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
4b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
4c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
4d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
4
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
GFB
4
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE
3
GOL
1
Ligand/Ion
GLYCEROL
4
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:30 , THR A:32 , GLY A:33 , GLN A:34 , ASP A:35 , ARG A:55 , ASN A:61 , ASP A:86 , LEU A:87 , LEU A:108 , GLY A:109 , ALA A:110 , SER A:112 , TYR A:123 , VAL A:127 , ALA A:153 , SER A:154 , THR A:155 , TYR A:179 , LYS A:183 , LEU A:206 , ASN A:208 , HIS A:209 , ARG A:214 , HOH A:1167 , HOH A:1168 , HOH A:1169 , HOH A:1190 , HOH A:1206 , HOH A:1224 , HOH A:1236 , HOH A:1240 , HOH A:1243 , HOH A:1269 , HOH A:1285 , HOH A:1338 , ARG B:56 , SER B:57 , SER B:58 , HOH B:539
binding site for residue NAP A 1001
02
AC2
SOFTWARE
VAL A:114 , GLU A:157 , ASN A:208 , ASN A:217 , PHE A:218 , VAL A:219 , LYS A:222 , LEU A:240 , GLY A:241 , ASN A:242 , ALA A:245 , ARG A:247 , VAL A:281 , TYR A:323 , ARG A:325 , GLU A:328 , HOH A:1175 , HOH A:1180 , HOH A:1231 , HOH A:1244 , HOH A:1296 , HOH A:1318
binding site for residue GDP A 1002
03
AC3
SOFTWARE
PHE A:60 , THR A:62 , GLU A:66 , TYR A:69 , HIS A:75 , GLU A:77 , LEU A:82 , TYR A:84 , HOH A:1136 , HOH A:1173 , HOH A:1182 , HOH A:1249 , HOH A:1258 , HOH A:1273 , HOH A:1316 , ALA B:216 , ASN B:217 , LYS B:222 , ARG B:225 , TYR B:323 , ALA B:372
binding site for residue GFB A 1003
04
AC4
SOFTWARE
TYR A:231 , HIS A:291 , HIS A:360
binding site for residue GOL A 1004
05
AC5
SOFTWARE
ALA A:216 , ASN A:217 , LYS A:222 , ARG A:225 , TYR A:323 , ALA A:372 , HOH A:1175 , PHE B:60 , THR B:62 , GLU B:66 , TYR B:69 , ALA B:74 , HIS B:75 , GLU B:77 , LEU B:82 , TYR B:84 , HOH B:522 , HOH B:525 , HOH B:537 , HOH B:554 , HOH B:613 , HOH B:734
binding site for residue GFB B 401
06
AC6
SOFTWARE
ARG A:56 , SER A:57 , SER A:58 , HOH A:1133 , HOH A:1274 , GLY B:30 , THR B:32 , GLY B:33 , GLN B:34 , ASP B:35 , ARG B:55 , ASN B:61 , ASP B:86 , LEU B:87 , LEU B:108 , GLY B:109 , ALA B:110 , SER B:112 , TYR B:123 , VAL B:127 , ALA B:153 , SER B:154 , THR B:155 , TYR B:179 , LYS B:183 , LEU B:206 , ASN B:208 , HIS B:209 , ARG B:214 , HOH B:526 , HOH B:548 , HOH B:589 , HOH B:590 , HOH B:625 , HOH B:630 , HOH B:655 , HOH B:657 , HOH B:677 , HOH B:716
binding site for residue NAP B 402
07
AC7
SOFTWARE
HOH A:1173 , VAL B:114 , GLU B:157 , ASN B:208 , ASN B:217 , PHE B:218 , VAL B:219 , LYS B:222 , LEU B:240 , GLY B:241 , ASN B:242 , ALA B:245 , ARG B:247 , VAL B:281 , TYR B:323 , ARG B:325 , GLU B:328 , HOH B:512 , HOH B:563 , HOH B:614 , HOH B:678 , HOH B:704
binding site for residue GDP B 403
08
AC8
SOFTWARE
GLY C:30 , THR C:32 , GLY C:33 , GLN C:34 , ASP C:35 , ARG C:55 , ASN C:61 , ASP C:86 , LEU C:87 , LEU C:108 , GLY C:109 , ALA C:110 , SER C:112 , TYR C:123 , VAL C:127 , ALA C:153 , SER C:154 , THR C:155 , TYR C:179 , LYS C:183 , LEU C:206 , ASN C:208 , HIS C:209 , ARG C:214 , HOH C:1140 , HOH C:1141 , HOH C:1144 , HOH C:1151 , HOH C:1210 , HOH C:1211 , HOH C:1216 , HOH C:1225 , HOH C:1257 , HOH C:1291 , HOH C:1303 , HOH C:1313 , HOH C:1314 , ARG D:56 , SER D:57 , SER D:58
binding site for residue NAP C 1001
09
AC9
SOFTWARE
VAL C:114 , GLU C:157 , ASN C:208 , ASN C:217 , PHE C:218 , VAL C:219 , LYS C:222 , LEU C:240 , GLY C:241 , ASN C:242 , ALA C:245 , ARG C:247 , VAL C:281 , TYR C:323 , ARG C:325 , GLU C:328 , HOH C:1124 , HOH C:1150 , HOH C:1221 , HOH C:1242 , HOH C:1288 , HOH D:555
binding site for residue GDP C 1002
10
AD1
SOFTWARE
PHE C:60 , THR C:62 , GLU C:66 , TYR C:69 , ALA C:74 , HIS C:75 , GLU C:77 , LEU C:82 , TYR C:84 , HOH C:1121 , HOH C:1135 , HOH C:1175 , HOH C:1201 , HOH C:1207 , HOH C:1323 , HOH C:1333 , ALA D:216 , ASN D:217 , LYS D:222 , ARG D:225 , TYR D:323 , ALA D:372 , HOH D:547
binding site for residue GFB C 1003
11
AD2
SOFTWARE
ALA C:216 , ASN C:217 , LYS C:222 , ARG C:225 , TYR C:323 , ALA C:372 , PHE D:60 , THR D:62 , GLU D:66 , TYR D:69 , HIS D:75 , GLU D:77 , LEU D:82 , TYR D:84 , HOH D:553 , HOH D:555 , HOH D:570 , HOH D:612 , HOH D:624 , HOH D:628 , HOH D:652 , HOH D:705 , HOH D:730
binding site for residue GFB D 401
12
AD3
SOFTWARE
ARG C:56 , SER C:57 , SER C:58 , GLY D:30 , THR D:32 , GLY D:33 , GLN D:34 , ASP D:35 , ARG D:55 , ASN D:61 , ASP D:86 , LEU D:87 , LEU D:108 , GLY D:109 , ALA D:110 , SER D:112 , TYR D:123 , VAL D:127 , ALA D:153 , SER D:154 , THR D:155 , TYR D:179 , LYS D:183 , LEU D:206 , ASN D:208 , HIS D:209 , ARG D:214 , HOH D:538 , HOH D:560 , HOH D:562 , HOH D:574 , HOH D:606 , HOH D:615 , HOH D:627 , HOH D:656 , HOH D:672 , HOH D:677 , HOH D:681 , HOH D:722
binding site for residue NAP D 402
13
AD4
SOFTWARE
HOH C:1175 , VAL D:114 , GLU D:157 , ASN D:208 , ASN D:217 , PHE D:218 , VAL D:219 , LYS D:222 , LEU D:240 , GLY D:241 , ASN D:242 , ALA D:245 , ARG D:247 , VAL D:281 , TYR D:323 , ARG D:325 , GLU D:328 , HOH D:537 , HOH D:563 , HOH D:646 , HOH D:666 , HOH D:683
binding site for residue GDP D 403
[
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SAPs(SNPs)/Variants
(0, 0)
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CATH Domains
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Pfam Domains
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