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5IK8
Asym. Unit
Info
Asym.Unit (382 KB)
Biol.Unit 1 (187 KB)
Biol.Unit 2 (189 KB)
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(1)
Title
:
LAMININ A2LG45 I-FORM, G6/7 BOUND.
Authors
:
D. C. Briggs, E. Hohenester, K. P. Campbell
Date
:
03 Mar 16 (Deposition) - 10 Aug 16 (Release) - 28 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Extracellular Matrix, Ligand Binding, Lg Domain, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. C. Briggs, T. Yoshida-Moriguchi, T. Zheng, D. Venzke, M. E. Anderson, A. Strazzulli, M. Moracci, L. Yu, E. Hohenester, K. P. Campbell
Structural Basis Of Laminin Binding To The Large Glycans On Dystroglycan.
Nat. Chem. Biol. V. 12 810 2016
[
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Hetero Components
(7, 24)
Info
All Hetero Components
1a: 7-HYDROXY-4-METHYL-2H-CHROMEN-2-ON... (4MUa)
2a: BETA-D-GLUCOPYRANURONIC ACID (BDPa)
2b: BETA-D-GLUCOPYRANURONIC ACID (BDPb)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
5a: CITRATE ANION (FLCa)
5b: CITRATE ANION (FLCb)
5c: CITRATE ANION (FLCc)
5d: CITRATE ANION (FLCd)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7a: XYLOPYRANOSE (XYSa)
7b: XYLOPYRANOSE (XYSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4MU
1
Ligand/Ion
7-HYDROXY-4-METHYL-2H-CHROMEN-2-ONE
2
BDP
2
Ligand/Ion
BETA-D-GLUCOPYRANURONIC ACID
3
CA
4
Ligand/Ion
CALCIUM ION
4
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
5
FLC
4
Ligand/Ion
CITRATE ANION
6
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
XYS
2
Ligand/Ion
XYLOPYRANOSE
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:2808 , LEU A:2825 , ILE A:2874 , ASP A:2876
binding site for residue CA A 4001
02
AC2
SOFTWARE
ASP A:2982 , ASN A:2999 , SER A:3053 , ASP A:3055 , FLC A:4004 , HOH A:4131
binding site for residue CA A 4002
03
AC3
SOFTWARE
ASN A:2999 , SER A:3051 , THR A:3052 , SER A:3053 , ASP A:3055 , CA A:4002 , HOH A:4125 , HOH A:4227 , HOH A:4243 , ARG B:2815
binding site for residue FLC A 4004
04
AC4
SOFTWARE
PRO A:2739 , LEU A:2740 , ALA A:2741 , MET A:2742 , GLU A:2750 , SER A:2751 , GLU A:2752 , PHE A:3065 , GLY A:3067 , ASN A:3077 , HOH A:4101 , HOH A:4105
binding site for residue FLC A 4005
05
AC5
SOFTWARE
ALA A:2754 , LEU A:2755 , THR A:2757
binding site for residue EDO A 4006
06
AC6
SOFTWARE
ARG A:2965 , GLY A:3082 , HOH A:4220
binding site for residue EDO A 4007
07
AC7
SOFTWARE
ASP A:3009 , PRO A:3013
binding site for residue EDO A 4008
08
AC8
SOFTWARE
TYR A:2939 , ASP A:2941 , GLY A:3109 , VAL A:3110 , GLN A:3111 , HOH A:4305
binding site for residue EDO A 4009
09
AC9
SOFTWARE
ASP A:2941 , ARG A:2968 , ASN A:3077 , ARG A:3079 , ARG A:3081
binding site for residue EDO A 4010
10
AD1
SOFTWARE
ASP B:2808 , LEU B:2825 , ILE B:2874 , ASP B:2876 , XYS B:4006 , BDP B:4007
binding site for residue CA B 4001
11
AD2
SOFTWARE
ASP B:2982 , ASN B:2999 , SER B:3053 , ASP B:3055 , FLC B:4010 , HOH B:4225
binding site for residue CA B 4002
12
AD3
SOFTWARE
PHE B:2945 , PRO B:3066 , GLY B:3067 , GLY B:3068 , ARG B:3079 , ARG B:3108 , HOH B:4104 , HOH B:4148
binding site for residue FLC B 4009
13
AD4
SOFTWARE
GLU A:2794 , SER A:2795 , ASN A:2816 , PRO A:2897 , TYR A:2900 , HOH A:4159 , ASN B:2999 , ALA B:3050 , SER B:3051 , THR B:3052 , SER B:3053 , ASP B:3055 , CA B:4002 , HOH B:4225
binding site for residue FLC B 4010
14
AD5
SOFTWARE
HOH A:4125 , GLN B:2813 , ARG B:2815 , TYR B:2820 , ILE B:2895 , HOH B:4176
binding site for residue EDO B 4011
15
AD6
SOFTWARE
VAL B:3099 , ASN B:3100 , PHE B:3101 , PRO B:3112 , HOH B:4160
binding site for residue EDO B 4012
16
AD7
SOFTWARE
HOH A:4212 , ALA B:3001 , GLY B:3002 , SER B:3046 , ASN B:3048
binding site for residue EDO B 4013
17
AD8
SOFTWARE
GLN B:3071 , LEU B:3074 , THR B:3076 , HOH B:4149 , HOH B:4188
binding site for residue EDO B 4014
18
AD9
SOFTWARE
ASN A:2889
binding site for Mono-Saccharide NAG A 4003 bound to ASN A 2889
19
AE1
SOFTWARE
ASN B:2889
binding site for Mono-Saccharide NAG B 4003 bound to ASN B 2889
20
AE2
SOFTWARE
ARG B:2803 , ASP B:2808 , LEU B:2825 , GLY B:2826 , LYS B:2871 , ASP B:2873 , ILE B:2874 , ASP B:2876 , CA B:4001 , HOH B:4131
binding site for Poly-Saccharide residues 4MU B 4004 through XYS B 4008
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (382 KB)
Header - Asym.Unit
Biol.Unit 1 (187 KB)
Header - Biol.Unit 1
Biol.Unit 2 (189 KB)
Header - Biol.Unit 2
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