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5IJQ
Asym. Unit
Info
Asym.Unit (281 KB)
Biol.Unit 1 (275 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AUTOTAXIN (ENPP2) RE-REFINED
Authors
:
J. Hausmann, R. P. Joosten, A. Perrakis
Date
:
02 Mar 16 (Deposition) - 15 Jun 16 (Release) - 13 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Lysophosphatidylcholine, Somatomedin, Inflammation, Metastasis, Neuropathic Pain, Vascular Development, Neural Development
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Hausmann, W. J. Keune, A. L. Hipgrave Ederveen, L. Van Zeijl, R. P. Joosten, A. Perrakis
Structural Snapshots Of The Catalytic Cycle Of The Phosphodiesterase Autotaxin.
J. Struct. Biol. V. 195 199 2016
[
close entry info
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Hetero Components
(10, 39)
Info
All Hetero Components
01a: 7ALPHA-HYDROXYCHOLESTEROL (5JKa)
02a: BETA-D-MANNOSE (BMAa)
03a: CALCIUM ION (CAa)
04a: GLYCEROL (GOLa)
05a: IODIDE ION (IODa)
05b: IODIDE ION (IODb)
05c: IODIDE ION (IODc)
05d: IODIDE ION (IODd)
05e: IODIDE ION (IODe)
05f: IODIDE ION (IODf)
05g: IODIDE ION (IODg)
05h: IODIDE ION (IODh)
05i: IODIDE ION (IODi)
05j: IODIDE ION (IODj)
05k: IODIDE ION (IODk)
05l: IODIDE ION (IODl)
05m: IODIDE ION (IODm)
05n: IODIDE ION (IODn)
05o: IODIDE ION (IODo)
05p: IODIDE ION (IODp)
05q: IODIDE ION (IODq)
05r: IODIDE ION (IODr)
05s: IODIDE ION (IODs)
05t: IODIDE ION (IODt)
05u: IODIDE ION (IODu)
05v: IODIDE ION (IODv)
05w: IODIDE ION (IODw)
05x: IODIDE ION (IODx)
07a: N-ACETYL-D-GLUCOSAMINE (NAGa)
07b: N-ACETYL-D-GLUCOSAMINE (NAGb)
06a: SODIUM ION (NAa)
06b: SODIUM ION (NAb)
08a: PHOSPHATE ION (PO4a)
09a: THIOCYANATE ION (SCNa)
09b: THIOCYANATE ION (SCNb)
09c: THIOCYANATE ION (SCNc)
09d: THIOCYANATE ION (SCNd)
10a: ZINC ION (ZNa)
10b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5JK
1
Ligand/Ion
7ALPHA-HYDROXYCHOLESTEROL
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CA
1
Ligand/Ion
CALCIUM ION
4
GOL
1
Ligand/Ion
GLYCEROL
5
IOD
24
Ligand/Ion
IODIDE ION
6
NA
2
Ligand/Ion
SODIUM ION
7
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
PO4
1
Ligand/Ion
PHOSPHATE ION
9
SCN
4
Ligand/Ion
THIOCYANATE ION
10
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:78 , SER A:81 , TYR A:214 , HIS A:251 , TRP A:254 , TRP A:260 , PHE A:274 , PHE A:777 , THR A:778 , HOH A:1002
binding site for residue 5JK A 901
02
AC2
SOFTWARE
TYR A:677 , LYS A:709
binding site for residue SCN A 905
03
AC3
SOFTWARE
ASP A:311 , HIS A:315 , HIS A:474 , PO4 A:908
binding site for residue ZN A 906
04
AC4
SOFTWARE
ASP A:171 , THR A:209 , ASP A:358 , HIS A:359 , PO4 A:908
binding site for residue ZN A 907
05
AC5
SOFTWARE
ASP A:171 , THR A:209 , ASN A:230 , LEU A:243 , ASP A:311 , HIS A:315 , HIS A:474 , LYS A:583 , ZN A:906 , ZN A:907
binding site for residue PO4 A 908
06
AC6
SOFTWARE
ASP A:739 , ASN A:741 , ASP A:743 , LEU A:745 , ASP A:747 , HOH A:1142
binding site for residue CA A 909
07
AC7
SOFTWARE
ASN A:230
binding site for residue IOD A 910
08
AC8
SOFTWARE
LEU A:788
binding site for residue IOD A 911
09
AC9
SOFTWARE
LYS A:709
binding site for residue IOD A 912
10
AD1
SOFTWARE
SER A:278
binding site for residue IOD A 915
11
AD2
SOFTWARE
SER A:846
binding site for residue IOD A 916
12
AD3
SOFTWARE
TYR A:496 , ARG A:535
binding site for residue IOD A 917
13
AD4
SOFTWARE
HIS A:281 , SER A:307 , THR A:334 , HOH A:1255
binding site for residue IOD A 918
14
AD5
SOFTWARE
HIS A:251
binding site for residue IOD A 919
15
AD6
SOFTWARE
ASP A:782
binding site for residue IOD A 920
16
AD7
SOFTWARE
LYS A:709
binding site for residue IOD A 924
17
AD8
SOFTWARE
PHE A:160 , VAL A:161 , ARG A:162
binding site for residue IOD A 925
18
AD9
SOFTWARE
ASN A:665
binding site for residue IOD A 926
19
AE1
SOFTWARE
TRP A:253 , IOD A:938
binding site for residue IOD A 927
20
AE2
SOFTWARE
LEU A:564
binding site for residue IOD A 929
21
AE3
SOFTWARE
GLN A:134
binding site for residue IOD A 930
22
AE4
SOFTWARE
ARG A:174 , ASN A:481
binding site for residue IOD A 931
23
AE5
SOFTWARE
TYR A:669 , ASP A:672 , MET A:675 , GOL A:939
binding site for residue NA A 933
24
AE6
SOFTWARE
ASN A:801 , SER A:804 , SER A:807 , HOH A:1148 , HOH A:1204
binding site for residue NA A 934
25
AE7
SOFTWARE
SER A:176 , LYS A:180 , PHE A:320
binding site for residue SCN A 935
26
AE8
SOFTWARE
LYS A:80 , SER A:83 , SER A:84 , CYS A:85 , ASP A:90
binding site for residue SCN A 936
27
AE9
SOFTWARE
GLN A:309 , ASN A:326 , PRO A:327
binding site for residue SCN A 937
28
AF1
SOFTWARE
ASN A:437 , IOD A:927
binding site for residue IOD A 938
29
AF2
SOFTWARE
TYR A:669 , MET A:675 , SER A:676 , NA A:933
binding site for residue GOL A 939
30
AF3
SOFTWARE
PRO A:522 , ASN A:524 , LEU A:745 , HIS A:831 , HOH A:1001 , HOH A:1027 , HOH A:1039 , HOH A:1065 , HOH A:1074 , HOH A:1222
binding site for Poly-Saccharide residues NAG A 902 through BMA A 904 bound to ASN A 524
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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Asym.Unit (281 KB)
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