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5IJB
Asym. Unit
Info
Asym.Unit (510 KB)
Biol.Unit 1 (252 KB)
Biol.Unit 2 (254 KB)
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(1)
Title
:
THE LIGAND-FREE STRUCTURE OF THE MOUSE TLR4/MD-2 COMPLEX
Authors
:
Y. Wang, L. Su, M. D. Morin, B. T. Jones, L. R. Whitby, M. Surakattula, H. H H. Shi, J. H. Choi, K. Wang, E. M. Moresco, M. Berger, X. Zhan, H. Zhang, D B. Beutler
Date
:
01 Mar 16 (Deposition) - 27 Apr 16 (Release) - 04 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.91
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Leucine-Rich Repeats, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Wang, L. Su, M. D. Morin, B. T. Jones, L. R. Whitby, M. M. Surakattula, H. Huang, H. Shi, J. H. Choi, K. W. Wang, E. M. Moresco, M. Berger, X. Zhan H. Zhang, D. L. Boger, B. Beutler
Tlr4/Md-2 Activation By A Synthetic Agonist With No Similarity To Lps.
Proc. Natl. Acad. Sci. Usa V. 113 E884 2016
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Hetero Components
(1, 18)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
1q: N-ACETYL-D-GLUCOSAMINE (NAGq)
1r: N-ACETYL-D-GLUCOSAMINE (NAGr)
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No.
Name
Count
Type
Full Name
1
NAG
18
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:177 , ASN A:204 , HIS A:228
binding site for Mono-Saccharide NAG A 701 bound to ASN A 204
02
AC2
SOFTWARE
ASN A:237
binding site for Mono-Saccharide NAG A 702 bound to ASN A 237
03
AC3
SOFTWARE
ASN A:492
binding site for Mono-Saccharide NAG A 703 bound to ASN A 492
04
AC4
SOFTWARE
SER A:502 , LYS A:503 , ASN A:524 , SER A:526
binding site for Poly-Saccharide residues NAG A 704 through NAG A 705 bound to ASN A 524
05
AC5
SOFTWARE
VAL B:177 , ASN B:204 , HIS B:228 , ARG B:256
binding site for Poly-Saccharide residues NAG B 701 through NAG B 702 bound to ASN B 204
06
AC6
SOFTWARE
ASN B:307
binding site for Poly-Saccharide residues NAG B 707 through NAG B 708 bound to ASN B 307
07
AC7
SOFTWARE
LEU B:466 , ASN B:492
binding site for Poly-Saccharide residues NAG B 703 through NAG B 704 bound to ASN B 492
08
AC8
SOFTWARE
SER B:502 , LYS B:503 , ASN B:524 , SER B:526 , HIS B:527
binding site for Poly-Saccharide residues NAG B 705 through NAG B 706 bound to ASN B 524
09
AC9
SOFTWARE
GLU C:64 , ASN C:114
binding site for Mono-Saccharide NAG C 201 bound to ASN C 114
10
AD1
SOFTWARE
ARG B:584 , CYS C:37 , ASP C:38 , ARG C:132 , VAL C:134 , ASN C:150
binding site for Poly-Saccharide residues NAG C 202 through NAG C 203 bound to ASN C 150
11
AD2
SOFTWARE
HIS D:62 , GLU D:64 , ASN D:114
binding site for Mono-Saccharide NAG D 202 bound to ASN D 114
12
AD3
SOFTWARE
CYS D:37 , ASP D:38 , ARG D:132 , ASN D:150
binding site for Mono-Saccharide NAG D 201 bound to ASN D 150
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Show PDB file:
Asym.Unit (510 KB)
Header - Asym.Unit
Biol.Unit 1 (252 KB)
Header - Biol.Unit 1
Biol.Unit 2 (254 KB)
Header - Biol.Unit 2
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