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5ID7
Asym. Unit
Info
Asym.Unit (401 KB)
Biol.Unit 1 (199 KB)
Biol.Unit 2 (198 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN IN COMPLEX WITH PHOSPHORODITHIOATE DERIVATIVE OF MYRISTOYL CYCLIC PHOSPHATIDIC ACID (CPA)
Authors
:
B. Sekula, A. Bujacz, P. Rytczak, G. Bujacz
Date
:
24 Feb 16 (Deposition) - 11 May 16 (Release) - 15 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.26
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Helical, Three-Domain Protein, Serum Albumin, Transport Protein, Drugs Delivery, Cyclic Phosphatidic Acid, Lysophospholipid
(Keyword Search:
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Reference
:
B. Sekula, A. Ciesielska, P. Rytczak, M. Koziokiewicz, A. Bujacz
Structural Evidence Of The Species-Dependent Albumin Bindin Of The Modified Cyclic Phosphatidic Acid With Cytotoxic Properties.
Biosci. Rep. V. 36 2016
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: (4S)-2-SULFANYLIDENE-4-[(TETRADECA... (6A4a)
1b: (4S)-2-SULFANYLIDENE-4-[(TETRADECA... (6A4b)
1c: (4S)-2-SULFANYLIDENE-4-[(TETRADECA... (6A4c)
1d: (4S)-2-SULFANYLIDENE-4-[(TETRADECA... (6A4d)
1e: (4S)-2-SULFANYLIDENE-4-[(TETRADECA... (6A4e)
1f: (4S)-2-SULFANYLIDENE-4-[(TETRADECA... (6A4f)
2a: DI(HYDROXYETHYL)ETHER (PEGa)
2b: DI(HYDROXYETHYL)ETHER (PEGb)
2c: DI(HYDROXYETHYL)ETHER (PEGc)
3a: TRIETHYLENE GLYCOL (PGEa)
3b: TRIETHYLENE GLYCOL (PGEb)
3c: TRIETHYLENE GLYCOL (PGEc)
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Label:
No.
Name
Count
Type
Full Name
1
6A4
6
Ligand/Ion
(4S)-2-SULFANYLIDENE-4-[(TETRADECANOYLOXY)METHYL]-1,3,2LAMBDA~5~-DIOXAPHOSPHOLANE-2-THIOLATE
2
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
3
PGE
3
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:342 , VAL A:344 , LEU A:345 , ARG A:348 , PRO A:384 , LEU A:387 , ASN A:391 , TYR A:411 , MET A:446 , GLU A:450 , LEU A:457 , LEU A:460 , ARG A:485 , HOH A:848
binding site for residue 6A4 A 601
02
AC2
SOFTWARE
TYR A:401 , ASN A:405 , PHE A:502 , LYS A:525 , ALA A:528 , LEU A:529 , PHE A:551 , SER A:579 , GLN A:580
binding site for residue 6A4 A 602
03
AC3
SOFTWARE
LYS A:199 , SER A:202 , PHE A:206 , PHE A:211 , TRP A:214 , HIS A:242 , VAL A:344 , SER A:454 , LEU A:457 , LEU A:481 , ARG A:484 , PGE A:606 , HOH A:741 , HOH A:771
binding site for residue 6A4 A 603
04
AC4
SOFTWARE
LYS A:432 , VAL A:455 , GLN A:459
binding site for residue PGE A 604
05
AC5
SOFTWARE
ARG A:209
binding site for residue PEG A 605
06
AC6
SOFTWARE
LEU A:219 , ARG A:222 , ARG A:257 , ILE A:264 , ILE A:290 , 6A4 A:603
binding site for residue PGE A 606
07
AC7
SOFTWARE
VAL A:46 , LEU A:66 , LEU A:69 , HOH A:717
binding site for residue PEG A 607
08
AC8
SOFTWARE
SER B:342 , VAL B:344 , LEU B:345 , ARG B:348 , PRO B:384 , LEU B:387 , TYR B:411 , MET B:446 , ALA B:449 , GLU B:450 , LEU B:457 , ARG B:485 , HOH B:728
binding site for residue 6A4 B 601
09
AC9
SOFTWARE
TYR B:401 , ASN B:405 , PHE B:507 , LYS B:525 , LEU B:532 , PHE B:551 , ALA B:552
binding site for residue 6A4 B 602
10
AD1
SOFTWARE
SER B:202 , PHE B:211 , TRP B:214 , HIS B:242 , VAL B:344 , SER B:454 , LEU B:457 , ARG B:484 , HOH B:770 , HOH B:787 , HOH B:788
binding site for residue 6A4 B 603
11
AD2
SOFTWARE
ASN B:429 , VAL B:433 , GLN B:459
binding site for residue PGE B 604
12
AD3
SOFTWARE
ARG B:209 , ASP B:324 , HOH B:702
binding site for residue PEG B 605
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SAPs(SNPs)/Variants
(0, 0)
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SCOP Domains
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Asym.Unit (401 KB)
Header - Asym.Unit
Biol.Unit 1 (199 KB)
Header - Biol.Unit 1
Biol.Unit 2 (198 KB)
Header - Biol.Unit 2
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