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5I4O
Asym. Unit
Info
Asym.Unit (124 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (32 KB)
Biol.Unit 3 (32 KB)
Biol.Unit 4 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF MMP-12 IN COMPLEX WITH A SELECTIVE SUGAR-CONJUGATED TRIAZOLE-LINKED CARBOXYLATE ZINC-CHELATOR WATER-SOLUBLE INHIBITOR (DC28).
Authors
:
E. A. Stura, L. Rosalia, D. Cuffaro, L. Tepshi, L. Ciccone, A. Rossello
Date
:
12 Feb 16 (Deposition) - 06 Jul 16 (Release) - 17 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Inhibitor, Complex, Glycoconjugate, Metalloprotease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Nuti, D. Cuffaro, F. D'Andrea, L. Rosalia, L. Tepshi, M. Fabbi, G. Carbotti, S. Ferrini, S. Santamaria, C. Camodeca, L. Ciccone, E. Orlandini, S. Nencetti, E. A. Stura, V. Dive, A. Rossello
Sugar-Based Arylsulfonamide Carboxylates As Selective And Water-Soluble Matrix Metalloproteinase-12 Inhibitors.
Chemmedchem V. 11 1626 2016
[
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: N-({1-[2-(ACETYLAMINO)-2-DEOXY-BET... (V28a)
2b: N-({1-[2-(ACETYLAMINO)-2-DEOXY-BET... (V28b)
2c: N-({1-[2-(ACETYLAMINO)-2-DEOXY-BET... (V28c)
2d: N-({1-[2-(ACETYLAMINO)-2-DEOXY-BET... (V28d)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
12
Ligand/Ion
CALCIUM ION
2
V28
4
Ligand/Ion
N-({1-[2-(ACETYLAMINO)-2-DEOXY-BETA-D-GLUCOPYRANOSYL]-1H-1,2,3-TRIAZOL-4-YL}METHYL)-N-[([1,1'-BIPHENYL]-4-YL)SULFONYL]-D-VALINE
3
ZN
8
Ligand/Ion
ZINC ION
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:179 , ILE A:180 , LEU A:181 , ALA A:182 , HIS A:183 , LEU A:214 , HIS A:218 , GLN A:219 , HIS A:222 , HIS A:228 , VAL A:235 , PHE A:237 , PRO A:238 , TYR A:240 , ZN A:302 , HOH A:603 , GLU C:128 , ARG C:135
binding site for residue V28 A 301
02
AC2
SOFTWARE
HIS A:218 , HIS A:222 , HIS A:228 , V28 A:301
binding site for residue ZN A 302
03
AC3
SOFTWARE
HIS A:168 , ASP A:170 , HIS A:183 , HIS A:196
binding site for residue ZN A 303
04
AC4
SOFTWARE
ASP A:158 , GLY A:190 , GLY A:192 , ASP A:194 , HOH A:615 , HOH A:616
binding site for residue CA A 304
05
AC5
SOFTWARE
ASP A:124 , GLU A:199 , GLU A:201 , HOH A:655 , HOH A:676
binding site for residue CA A 305
06
AC6
SOFTWARE
ASP A:175 , GLY A:176 , GLY A:178 , ILE A:180 , ASP A:198 , GLU A:201
binding site for residue CA A 306
07
AC7
SOFTWARE
GLY B:179 , ILE B:180 , LEU B:181 , ALA B:182 , HIS B:183 , LEU B:214 , HIS B:218 , GLN B:219 , HIS B:222 , HIS B:228 , VAL B:235 , PHE B:237 , PRO B:238 , THR B:239 , TYR B:240 , ZN B:302 , LYS D:241
binding site for residue V28 B 301
08
AC8
SOFTWARE
HIS B:218 , HIS B:222 , HIS B:228 , V28 B:301
binding site for residue ZN B 302
09
AC9
SOFTWARE
HIS B:168 , ASP B:170 , HIS B:183 , HIS B:196 , HOH B:603
binding site for residue ZN B 303
10
AD1
SOFTWARE
ASP B:158 , GLY B:190 , GLY B:192 , ASP B:194 , HOH B:624
binding site for residue CA B 304
11
AD2
SOFTWARE
HOH A:627 , HOH A:698 , ASP B:124 , GLU B:199 , GLU B:201
binding site for residue CA B 305
12
AD3
SOFTWARE
ASP B:175 , GLY B:176 , GLY B:178 , ILE B:180 , ASP B:198 , GLU B:201
binding site for residue CA B 306
13
AD4
SOFTWARE
GLU A:128 , GLY C:179 , ILE C:180 , LEU C:181 , ALA C:182 , LEU C:214 , HIS C:218 , GLN C:219 , HIS C:222 , HIS C:228 , VAL C:235 , PHE C:237 , PRO C:238 , TYR C:240 , ZN C:302 , HOH C:601 , HOH C:650
binding site for residue V28 C 301
14
AD5
SOFTWARE
HIS C:218 , HIS C:222 , HIS C:228 , V28 C:301
binding site for residue ZN C 302
15
AD6
SOFTWARE
HIS C:168 , ASP C:170 , HIS C:183 , HIS C:196
binding site for residue ZN C 303
16
AD7
SOFTWARE
ASP C:158 , GLY C:190 , GLY C:192 , ASP C:194 , HOH C:618 , HOH C:627
binding site for residue CA C 304
17
AD8
SOFTWARE
ASP C:124 , GLU C:199 , GLU C:201 , HOH C:671 , HOH C:677
binding site for residue CA C 305
18
AD9
SOFTWARE
ASP C:175 , GLY C:176 , GLY C:178 , ILE C:180 , ASP C:198 , GLU C:201
binding site for residue CA C 306
19
AE1
SOFTWARE
LYS B:233 , HOH B:622 , ILE D:180 , LEU D:181 , ALA D:182 , HIS D:183 , LEU D:214 , HIS D:218 , GLN D:219 , HIS D:222 , HIS D:228 , VAL D:235 , PHE D:237 , PRO D:238 , THR D:239 , TYR D:240 , LYS D:241 , ZN D:302 , HOH D:609
binding site for residue V28 D 301
20
AE2
SOFTWARE
HIS D:218 , HIS D:222 , HIS D:228 , V28 D:301
binding site for residue ZN D 302
21
AE3
SOFTWARE
HIS D:168 , ASP D:170 , HIS D:183 , HIS D:196
binding site for residue ZN D 303
22
AE4
SOFTWARE
ASP D:158 , GLY D:190 , GLY D:192 , ASP D:194 , HOH D:606
binding site for residue CA D 304
23
AE5
SOFTWARE
ASP D:124 , GLU D:199 , GLU D:201 , HOH D:640
binding site for residue CA D 305
24
AE6
SOFTWARE
ASP D:175 , GLY D:176 , GLY D:178 , ILE D:180 , ASP D:198 , GLU D:201
binding site for residue CA D 306
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (124 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 2 (32 KB)
Header - Biol.Unit 2
Biol.Unit 3 (32 KB)
Header - Biol.Unit 3
Biol.Unit 4 (32 KB)
Header - Biol.Unit 4
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