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5I43
Biol. Unit 2
Info
Asym.Unit (136 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (35 KB)
Biol.Unit 3 (35 KB)
Biol.Unit 4 (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF MMP-12 IN COMPLEX WITH A SELECTIVE SUGAR-CONJUGATED TRIAZOLE-LINKED CARBOXYLATE CHELATOR WATER-SOLUBLE INHIBITOR (DC32).
Authors
:
E. A. Stura, L. Rosalia, D. Cuffaro, L. Tepshi, L. Ciccone, A. Rossello
Date
:
11 Feb 16 (Deposition) - 06 Jul 16 (Release) - 17 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Inhibitor, Complex, Glycoconjugate, Metalloprotease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Nuti, D. Cuffaro, F. D'Andrea, L. Rosalia, L. Tepshi, M. Fabbi, G. Carbotti, S. Ferrini, S. Santamaria, C. Camodeca, L. Ciccone, E. Orlandini, S. Nencetti, E. A. Stura, V. Dive, A. Rossello
Sugar-Based Arylsulfonamide Carboxylates As Selective And Water-Soluble Matrix Metalloproteinase-12 Inhibitors.
Chemmedchem V. 11 1626 2016
[
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: (2R)-2-[({1-[3-({(2R,3R,4R,5S,6R)-... (67Ma)
1b: (2R)-2-[({1-[3-({(2R,3R,4R,5S,6R)-... (67Mb)
1c: (2R)-2-[({1-[3-({(2R,3R,4R,5S,6R)-... (67Mc)
1d: (2R)-2-[({1-[3-({(2R,3R,4R,5S,6R)-... (67Md)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
3a: DIMETHYL SULFOXIDE (DMSa)
3b: DIMETHYL SULFOXIDE (DMSb)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
4m: 1,2-ETHANEDIOL (EDOm)
4n: 1,2-ETHANEDIOL (EDOn)
4o: 1,2-ETHANEDIOL (EDOo)
4p: 1,2-ETHANEDIOL (EDOp)
4q: 1,2-ETHANEDIOL (EDOq)
4r: 1,2-ETHANEDIOL (EDOr)
4s: 1,2-ETHANEDIOL (EDOs)
4t: 1,2-ETHANEDIOL (EDOt)
4u: 1,2-ETHANEDIOL (EDOu)
4v: 1,2-ETHANEDIOL (EDOv)
4w: 1,2-ETHANEDIOL (EDOw)
5a: S-1,2-PROPANEDIOL (PGOa)
5b: S-1,2-PROPANEDIOL (PGOb)
5c: S-1,2-PROPANEDIOL (PGOc)
5d: S-1,2-PROPANEDIOL (PGOd)
5e: S-1,2-PROPANEDIOL (PGOe)
5f: S-1,2-PROPANEDIOL (PGOf)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
67M
1
Ligand/Ion
(2R)-2-[({1-[3-({(2R,3R,4R,5S,6R)-3-(ACETYLAMINO)-4,5-BIS(ACETYLOXY)-6-[(ACETYLOXY)METHYL]TETRAHYDRO-2H-PYRAN-2-YL}OXY)PROPYL]-1H-1,2,3-TRIAZOL-4-YL}METHYL)(BIPHENYL-4-YLSULFONYL)AMINO]-3-METHYLBUTANOIC ACID(NON-PREFERRED NAME)
2
CA
-1
Ligand/Ion
CALCIUM ION
3
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
4
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
5
PGO
1
Ligand/Ion
S-1,2-PROPANEDIOL
6
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(14, 14)
Info
All Sites
01: AC6 (SOFTWARE)
02: AD8 (SOFTWARE)
03: AD9 (SOFTWARE)
04: AE1 (SOFTWARE)
05: AE2 (SOFTWARE)
06: AE3 (SOFTWARE)
07: AE4 (SOFTWARE)
08: AE5 (SOFTWARE)
09: AE6 (SOFTWARE)
10: AE7 (SOFTWARE)
11: AE8 (SOFTWARE)
12: AE9 (SOFTWARE)
13: AF1 (SOFTWARE)
14: AF2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
GLY A:178 , GLY A:179 , ILE A:180 , LEU A:181 , ALA A:182 , HIS A:183 , LEU A:214 , HIS A:218 , GLN A:219 , HIS A:222 , HIS A:228 , VAL A:235 , PHE A:237 , PRO A:238 , TYR A:240 , ZN A:301 , HOH A:413 , HOH A:436 , HOH A:466 , LYS B:241
binding site for residue 67M A 306
02
AD8
SOFTWARE
HOH A:435 , GLY B:179 , ILE B:180 , LEU B:181 , ALA B:182 , HIS B:183 , LEU B:214 , HIS B:218 , GLN B:219 , HIS B:222 , HIS B:228 , VAL B:235 , PHE B:237 , PRO B:238 , TYR B:240 , ZN B:302 , DMS B:312 , HOH B:434 , HOH B:468 , HOH B:533
binding site for residue 67M B 301
03
AD9
SOFTWARE
HIS B:218 , HIS B:222 , HIS B:228 , 67M B:301
binding site for residue ZN B 302
04
AE1
SOFTWARE
HIS B:168 , ASP B:170 , HIS B:183 , HIS B:196
binding site for residue ZN B 303
05
AE2
SOFTWARE
ASP B:158 , GLY B:190 , GLY B:192 , ASP B:194 , HOH B:442 , HOH B:454
binding site for residue CA B 304
06
AE3
SOFTWARE
ASP B:124 , GLU B:199 , GLU B:201 , HOH B:475 , HOH B:487
binding site for residue CA B 305
07
AE4
SOFTWARE
ASP B:175 , GLY B:176 , GLY B:178 , ILE B:180 , ASP B:198 , GLU B:201
binding site for residue CA B 306
08
AE5
SOFTWARE
ALA B:184 , GLY B:186 , HIS B:222 , GLY B:225 , LEU B:226
binding site for residue EDO B 307
09
AE6
SOFTWARE
LYS B:241 , TYR B:242 , HOH B:449
binding site for residue EDO B 308
10
AE7
SOFTWARE
VAL B:144 , THR B:145 , PRO B:146
binding site for residue EDO B 309
11
AE8
SOFTWARE
LYS B:177 , PHE B:202 , HOH B:416 , HOH B:425
binding site for residue EDO B 310
12
AE9
SOFTWARE
HOH B:455
binding site for residue EDO B 311
13
AF1
SOFTWARE
PHE B:185 , 67M B:301
binding site for residue DMS B 312
14
AF2
SOFTWARE
ARG B:127
binding site for residue PGO B 313
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (136 KB)
Header - Asym.Unit
Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
Biol.Unit 3 (35 KB)
Header - Biol.Unit 3
Biol.Unit 4 (36 KB)
Header - Biol.Unit 4
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