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5I2Z
Asym. Unit
Info
Asym.Unit (128 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (33 KB)
Biol.Unit 3 (34 KB)
Biol.Unit 4 (33 KB)
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Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF MMP-12 IN COMPLEX WITH A SELECTIVE SUGAR-CONJUGATED TRIAZOLE-LINKED CARBOXYLATE CHELATING WATER-SOLUBLE INHIBITOR (DC24).
Authors
:
E. A. Stura, L. Rosalia, D. Cuffaro, L. Tepshi, L. Ciccone, A. Rossello
Date
:
09 Feb 16 (Deposition) - 06 Jul 16 (Release) - 17 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Inhibitor, Complex, Glycoconjugate, Metalloprotease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Nuti, D. Cuffaro, F. D'Andrea, L. Rosalia, L. Tepshi, M. Fabbi, G. Carbotti, S. Ferrini, S. Santamaria, C. Camodeca, L. Ciccone, E. Orlandini, S. Nencetti, E. A. Stura, V. Dive, A. Rossello
Sugar-Based Arylsulfonamide Carboxylates As Selective And Water-Soluble Matrix Metalloproteinase-12 Inhibitors.
Chemmedchem V. 11 1626 2016
[
close entry info
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Hetero Components
(6, 28)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: DIMETHYL SULFOXIDE (DMSa)
3a: 1,2-ETHANEDIOL (EDOa)
4a: S-1,2-PROPANEDIOL (PGOa)
4b: S-1,2-PROPANEDIOL (PGOb)
5a: N-[([1,1'-BIPHENYL]-4-YL)SULFONYL]... (V24a)
5b: N-[([1,1'-BIPHENYL]-4-YL)SULFONYL]... (V24b)
5c: N-[([1,1'-BIPHENYL]-4-YL)SULFONYL]... (V24c)
5d: N-[([1,1'-BIPHENYL]-4-YL)SULFONYL]... (V24d)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
12
Ligand/Ion
CALCIUM ION
2
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
3
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
4
PGO
2
Ligand/Ion
S-1,2-PROPANEDIOL
5
V24
4
Ligand/Ion
N-[([1,1'-BIPHENYL]-4-YL)SULFONYL]-N-({1-[3,4,6-TRI-O-ACETYL-2-(ACETYLAMINO)-2-DEOXY-BETA-D-GLUCOPYRANOSYL]-1H-1,2,3-TRIAZOL-4-YL}METHYL)-D-VALINE
6
ZN
8
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:179 , ILE A:180 , LEU A:181 , ALA A:182 , HIS A:183 , LEU A:214 , THR A:215 , HIS A:218 , GLN A:219 , HIS A:222 , HIS A:228 , VAL A:235 , PHE A:237 , PRO A:238 , THR A:239 , TYR A:240 , ZN A:302 , HOH A:460 , HOH A:462 , HOH A:477 , HOH A:478 , GLU B:128 , ARG B:135
binding site for residue V24 A 301
02
AC2
SOFTWARE
HIS A:218 , HIS A:222 , HIS A:228 , V24 A:301
binding site for residue ZN A 302
03
AC3
SOFTWARE
HIS A:168 , ASP A:170 , HIS A:183 , HIS A:196
binding site for residue ZN A 303
04
AC4
SOFTWARE
ASP A:158 , GLY A:190 , GLY A:192 , ASP A:194 , HOH A:403
binding site for residue CA A 304
05
AC5
SOFTWARE
ASP A:124 , GLU A:199 , GLU A:201 , HOH A:459
binding site for residue CA A 305
06
AC6
SOFTWARE
ASP A:175 , GLY A:176 , GLY A:178 , ILE A:180 , ASP A:198 , GLU A:201
binding site for residue CA A 306
07
AC7
SOFTWARE
TYR A:132 , THR A:205 , PHE A:213 , ILE A:245 , HOH A:447 , HOH A:468
binding site for residue PGO A 307
08
AC8
SOFTWARE
GLU A:128 , ASP A:131 , GLY B:179 , ILE B:180 , LEU B:181 , ALA B:182 , HIS B:183 , LEU B:214 , THR B:215 , HIS B:218 , GLN B:219 , HIS B:222 , HIS B:228 , VAL B:235 , PHE B:237 , PRO B:238 , THR B:239 , TYR B:240 , ZN B:302 , HOH B:645 , HOH B:647
binding site for residue V24 B 301
09
AC9
SOFTWARE
HIS B:218 , HIS B:222 , HIS B:228 , V24 B:301
binding site for residue ZN B 302
10
AD1
SOFTWARE
HIS B:168 , ASP B:170 , HIS B:183 , HIS B:196
binding site for residue ZN B 303
11
AD2
SOFTWARE
ASP B:158 , GLY B:190 , GLY B:192 , ASP B:194 , HOH B:612 , HOH B:632
binding site for residue CA B 304
12
AD3
SOFTWARE
ASP B:124 , GLU B:199 , GLU B:201 , HOH B:660 , HOH B:668
binding site for residue CA B 305
13
AD4
SOFTWARE
ASP B:175 , GLY B:176 , GLY B:178 , ILE B:180 , ASP B:198 , GLU B:201
binding site for residue CA B 306
14
AD5
SOFTWARE
HIS C:172 , ILE C:180 , LEU C:181 , ALA C:182 , HIS C:183 , LEU C:214 , HIS C:218 , GLN C:219 , HIS C:222 , HIS C:228 , VAL C:235 , PHE C:237 , PRO C:238 , THR C:239 , TYR C:240 , ZN C:302 , HOH C:402 , HOH C:456 , HOH C:461 , HOH C:462 , PRO D:232
binding site for residue V24 C 301
15
AD6
SOFTWARE
HIS C:218 , HIS C:222 , HIS C:228 , V24 C:301
binding site for residue ZN C 302
16
AD7
SOFTWARE
HIS C:168 , ASP C:170 , HIS C:183 , HIS C:196
binding site for residue ZN C 303
17
AD8
SOFTWARE
ASP C:158 , GLY C:190 , GLY C:192 , ASP C:194 , HOH C:424 , HOH C:452
binding site for residue CA C 304
18
AD9
SOFTWARE
ASP C:124 , GLU C:199 , GLU C:201 , HOH C:484 , HOH C:491
binding site for residue CA C 305
19
AE1
SOFTWARE
ASP C:175 , GLY C:176 , GLY C:178 , ILE C:180 , ASP C:198 , GLU C:201
binding site for residue CA C 306
20
AE2
SOFTWARE
TRP C:109 , ARG C:110 , GLY C:188
binding site for residue EDO C 307
21
AE3
SOFTWARE
LYS C:241 , ASP D:175 , GLY D:179 , ILE D:180 , LEU D:181 , ALA D:182 , LEU D:214 , HIS D:218 , GLN D:219 , HIS D:222 , HIS D:228 , VAL D:235 , PHE D:237 , PRO D:238 , THR D:239 , TYR D:240 , ZN D:302 , DMS D:307 , HOH D:424 , HOH D:431 , HOH D:506
binding site for residue V24 D 301
22
AE4
SOFTWARE
HIS D:218 , HIS D:222 , HIS D:228 , V24 D:301
binding site for residue ZN D 302
23
AE5
SOFTWARE
HIS D:168 , ASP D:170 , HIS D:183 , HIS D:196
binding site for residue ZN D 303
24
AE6
SOFTWARE
ASP D:158 , GLY D:190 , GLY D:192 , ASP D:194 , HOH D:404 , HOH D:423
binding site for residue CA D 304
25
AE7
SOFTWARE
ASP D:124 , GLU D:199 , GLU D:201 , HOH D:433 , HOH D:482
binding site for residue CA D 305
26
AE8
SOFTWARE
ASP D:175 , GLY D:176 , GLY D:178 , ILE D:180 , ASP D:198 , GLU D:201
binding site for residue CA D 306
27
AE9
SOFTWARE
HIS D:172 , ALA D:184 , V24 D:301
binding site for residue DMS D 307
28
AF1
SOFTWARE
TYR D:132 , ALA D:133 , LYS D:136 , THR D:205 , PHE D:213 , HOH D:443 , HOH D:467
binding site for residue PGO D 308
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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