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5HYS
Biol. Unit 2
Info
Asym.Unit (429 KB)
Biol.Unit 1 (215 KB)
Biol.Unit 2 (214 KB)
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(1)
Title
:
STRUCTURE OF IGE COMPLEXED WITH OMALIZUMAB
Authors
:
L. F. Pennington, S. S. Tarchevskaya, K. Sathiyamoorthy, T. S. Jardetz
Date
:
01 Feb 16 (Deposition) - 01 Jun 16 (Release) - 01 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,G,H,I,L (1x)
Biol. Unit 2: C,D,E,F,J,K (1x)
Keywords
:
Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. F. Pennington, S. Tarchevskaya, D. Brigger, K. Sathiyamoorthy, M. T. Graham, K. C. Nadeau, A. Eggel, T. S. Jardetzky
Structural Basis Of Omalizumab Therapy And Omalizumab-Mediated Ige Exchange.
Nat Commun V. 7 11610 2016
[
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Hetero Components
(4, 36)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4a: SULFATE ION (SO4a)
4aa: SULFATE ION (SO4aa)
4ab: SULFATE ION (SO4ab)
4ac: SULFATE ION (SO4ac)
4ad: SULFATE ION (SO4ad)
4ae: SULFATE ION (SO4ae)
4af: SULFATE ION (SO4af)
4ag: SULFATE ION (SO4ag)
4ah: SULFATE ION (SO4ah)
4ai: SULFATE ION (SO4ai)
4aj: SULFATE ION (SO4aj)
4ak: SULFATE ION (SO4ak)
4al: SULFATE ION (SO4al)
4am: SULFATE ION (SO4am)
4an: SULFATE ION (SO4an)
4ao: SULFATE ION (SO4ao)
4ap: SULFATE ION (SO4ap)
4aq: SULFATE ION (SO4aq)
4ar: SULFATE ION (SO4ar)
4as: SULFATE ION (SO4as)
4at: SULFATE ION (SO4at)
4au: SULFATE ION (SO4au)
4av: SULFATE ION (SO4av)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
4w: SULFATE ION (SO4w)
4x: SULFATE ION (SO4x)
4y: SULFATE ION (SO4y)
4z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
26
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC6 (SOFTWARE)
02: AD4 (SOFTWARE)
03: AD7 (SOFTWARE)
04: AD8 (SOFTWARE)
05: AD9 (SOFTWARE)
06: AE1 (SOFTWARE)
07: AE2 (SOFTWARE)
08: AE3 (SOFTWARE)
09: AE4 (SOFTWARE)
10: AE5 (SOFTWARE)
11: AE6 (SOFTWARE)
12: AE7 (SOFTWARE)
13: AE8 (SOFTWARE)
14: AE9 (SOFTWARE)
15: AF1 (SOFTWARE)
16: AF2 (SOFTWARE)
17: AF3 (SOFTWARE)
18: AF4 (SOFTWARE)
19: AG2 (SOFTWARE)
20: AG3 (SOFTWARE)
21: AG4 (SOFTWARE)
22: AG5 (SOFTWARE)
23: AG6 (SOFTWARE)
24: AG8 (SOFTWARE)
25: AG9 (SOFTWARE)
26: AH1 (SOFTWARE)
27: AH4 (SOFTWARE)
28: AH5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
ARG J:427 , SER L:69 , GLY L:70
binding site for residue SO4 L 302
02
AD4
SOFTWARE
SER B:125 , ASP B:126 , GLU B:127 , HIS J:384
binding site for residue SO4 B 302
03
AD7
SOFTWARE
PRO C:14 , SER C:120 , SER C:121
binding site for residue SO4 C 301
04
AD8
SOFTWARE
ASN C:59 , TYR C:60 , LYS C:65
binding site for residue SO4 C 302
05
AD9
SOFTWARE
ASP C:216 , LYS C:217 , LYS C:218
binding site for residue SO4 C 303
06
AE1
SOFTWARE
SER C:7 , GLY C:8 , GLY C:9 , THR C:115 , LYS C:209
binding site for residue SO4 C 304
07
AE2
SOFTWARE
LYS D:43 , LYS D:46 , LYS D:49
binding site for residue SO4 D 301
08
AE3
SOFTWARE
SER D:12 , LYS D:111 , SER F:9 , SER F:10 , LYS F:107
binding site for residue SO4 D 302
09
AE4
SOFTWARE
SER D:125 , ASP D:126 , GLU D:127
binding site for residue SO4 D 303
10
AE5
SOFTWARE
SER D:64
binding site for residue SO4 D 304
11
AE6
SOFTWARE
SER C:140 , VAL D:119 , LYS D:211 , ARG G:408
binding site for residue SO4 D 305
12
AE7
SOFTWARE
SER D:9 , SER D:10 , LYS D:107 , SER F:12 , LYS F:111
binding site for residue SO4 D 306
13
AE8
SOFTWARE
THR E:115 , LEU E:116 , PRO E:157
binding site for residue SO4 E 301
14
AE9
SOFTWARE
ASP E:216 , LYS E:217 , LYS E:218
binding site for residue SO4 E 302
15
AF1
SOFTWARE
LYS F:43 , LYS F:46 , LYS F:49
binding site for residue SO4 F 301
16
AF2
SOFTWARE
LYS D:149 , SER F:160 , GLY F:161 , SER F:163
binding site for residue SO4 F 302
17
AF3
SOFTWARE
SER F:125 , ASP F:126 , GLU F:127
binding site for residue SO4 F 303
18
AF4
SOFTWARE
GLN F:27 , SER F:28 , GLY J:368 , THR J:369
binding site for residue SO4 F 304
19
AG2
SOFTWARE
LYS B:187 , GLY J:406 , THR J:407 , ARG J:408
binding site for residue SO4 J 606
20
AG3
SOFTWARE
SER A:123 , LYS A:125 , PRO J:486 , ASP J:487 , HOH J:701
binding site for residue SO4 J 607
21
AG4
SOFTWARE
LYS B:130 , ARG J:376 , ASP J:409
binding site for residue SO4 J 608
22
AG5
SOFTWARE
SER J:344 , SER J:475
binding site for residue SO4 J 609
23
AG6
SOFTWARE
GLN J:494 , THR K:493 , GLN K:494 , ARG K:496
binding site for residue SO4 K 606
24
AG8
SOFTWARE
GLY K:406 , THR K:407 , ARG K:408
binding site for residue SO4 K 608
25
AG9
SOFTWARE
MET K:430 , ARG K:431 , SER K:432
binding site for residue SO4 K 609
26
AH1
SOFTWARE
SER D:69 , GLY D:70 , ARG K:427
binding site for residue SO4 K 610
27
AH4
SOFTWARE
TYR J:339 , ASP J:362 , GLN J:392 , ASN J:394
binding site for Poly-Saccharide residues NAG J 601 through MAN J 605 bound to ASN J 394
28
AH5
SOFTWARE
TYR K:339 , ASP K:362 , GLN K:392 , ASN K:394 , GLN K:494
binding site for Poly-Saccharide residues NAG K 601 through MAN K 605 bound to ASN K 394
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Info
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
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Pfam Domains
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