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5HYN
Biol. Unit 8
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (373 KB)
Biol.Unit 2 (369 KB)
Biol.Unit 3 (366 KB)
Biol.Unit 4 (367 KB)
Biol.Unit 5 (371 KB)
Biol.Unit 6 (368 KB)
Biol.Unit 7 (365 KB)
Biol.Unit 8 (365 KB)
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(1)
Title
:
STRUCTURE OF HUMAN POLYCOMB REPRESSIVE COMPLEX 2 (PRC2) WITH ONCOGENIC HISTONE H3K27M PEPTIDE
Authors
:
Y. Zhang, N. Justin, J. R. Wilson, S. J. Gamblin
Date
:
01 Feb 16 (Deposition) - 11 May 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,O,P,Q,R,S,T,U
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Biol. Unit 3: K,L,M,O,P (1x)
Biol. Unit 4: Q,R,S,T,U (1x)
Biol. Unit 5: A,B,C,D (1x)
Biol. Unit 6: F,G,H,I (1x)
Biol. Unit 7: K,L,M,O (1x)
Biol. Unit 8: Q,R,S,T (1x)
Keywords
:
Chromatin Modification Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Justin, Y. Zhang, C. Tarricone, S. R. Martin, S. Chen, E. Underwood, V. De Marco, L. F. Haire, P. A. Walker, D. Reinberg, J. R. Wilson, S. J. Gamblin
Structural Basis Of Oncogenic Histone H3K27M Inhibition Of Human Polycomb Repressive Complex 2.
Nat Commun V. 7 11316 2016
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-TRIMETHYLLYSINE (M3La)
1b: N-TRIMETHYLLYSINE (M3Lb)
1c: N-TRIMETHYLLYSINE (M3Lc)
1d: N-TRIMETHYLLYSINE (M3Ld)
2a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
2b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
2c: S-ADENOSYL-L-HOMOCYSTEINE (SAHc)
2d: S-ADENOSYL-L-HOMOCYSTEINE (SAHd)
3a: ZINC ION (ZNa)
3aa: ZINC ION (ZNaa)
3ab: ZINC ION (ZNab)
3ac: ZINC ION (ZNac)
3ad: ZINC ION (ZNad)
3ae: ZINC ION (ZNae)
3af: ZINC ION (ZNaf)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
3m: ZINC ION (ZNm)
3n: ZINC ION (ZNn)
3o: ZINC ION (ZNo)
3p: ZINC ION (ZNp)
3q: ZINC ION (ZNq)
3r: ZINC ION (ZNr)
3s: ZINC ION (ZNs)
3t: ZINC ION (ZNt)
3u: ZINC ION (ZNu)
3v: ZINC ION (ZNv)
3w: ZINC ION (ZNw)
3x: ZINC ION (ZNx)
3y: ZINC ION (ZNy)
3z: ZINC ION (ZNz)
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Select:
Label:
No.
Name
Count
Type
Full Name
1
M3L
-1
Mod. Amino Acid
N-TRIMETHYLLYSINE
2
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(11, 11)
Info
All Sites
01: AF1 (SOFTWARE)
02: AF2 (SOFTWARE)
03: AF3 (SOFTWARE)
04: AF4 (SOFTWARE)
05: AF5 (SOFTWARE)
06: AF6 (SOFTWARE)
07: AF7 (SOFTWARE)
08: AF8 (SOFTWARE)
09: AF9 (SOFTWARE)
10: AG5 (SOFTWARE)
11: AG6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AF1
SOFTWARE
CYS Q:286 , CYS Q:289 , CYS Q:294 , HIS Q:297
binding site for residue ZN Q 1001
02
AF2
SOFTWARE
CYS Q:320 , GLN Q:323 , CYS Q:452 , CYS Q:463
binding site for residue ZN Q 1002
03
AF3
SOFTWARE
CYS Q:530 , CYS Q:543 , CYS Q:549 , CYS Q:553
binding site for residue ZN Q 1003
04
AF4
SOFTWARE
CYS Q:523 , HIS Q:525 , CYS Q:530 , CYS Q:534
binding site for residue ZN Q 1004
05
AF5
SOFTWARE
CYS Q:523 , CYS Q:536 , CYS Q:543 , CYS Q:547
binding site for residue ZN Q 1005
06
AF6
SOFTWARE
CYS Q:566 , CYS Q:580 , CYS Q:588 , CYS Q:601 , ZN Q:1008
binding site for residue ZN Q 1006
07
AF7
SOFTWARE
CYS Q:560 , CYS Q:573 , CYS Q:580 , CYS Q:585 , ZN Q:1008
binding site for residue ZN Q 1007
08
AF8
SOFTWARE
CYS Q:560 , CYS Q:562 , CYS Q:566 , CYS Q:571 , ZN Q:1006 , ZN Q:1007
binding site for residue ZN Q 1008
09
AF9
SOFTWARE
VAL Q:621 , ALA Q:622 , GLY Q:623 , TRP Q:624 , MET Q:662 , CYS Q:663 , SER Q:664 , PHE Q:665 , PHE Q:686 , ASN Q:688 , HIS Q:689 , TYR Q:726 , ALA Q:733 , LEU Q:734 , LYS Q:735
binding site for residue SAH Q 1009
10
AG5
SOFTWARE
TYR Q:133 , ASP Q:136 , TYR R:148 , ILE R:363 , TRP R:364 , TYR R:365 , ARG R:414 , ALA U:4 , GLN U:5 , PHE U:8 , GLN U:10
binding site for Di-peptide ARG U 6 and M3L U 7
11
AG6
SOFTWARE
TYR Q:133 , ASP Q:136 , PHE R:97 , TYR R:148 , ILE R:363 , TRP R:364 , TYR R:365 , ARG R:414 , ASP R:430 , ARG U:6 , ALA U:9
binding site for Di-peptide M3L U 7 and PHE U 8
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (1.4 MB)
Header - Asym.Unit
Biol.Unit 1 (373 KB)
Header - Biol.Unit 1
Biol.Unit 2 (369 KB)
Header - Biol.Unit 2
Biol.Unit 3 (366 KB)
Header - Biol.Unit 3
Biol.Unit 4 (367 KB)
Header - Biol.Unit 4
Biol.Unit 5 (371 KB)
Header - Biol.Unit 5
Biol.Unit 6 (368 KB)
Header - Biol.Unit 6
Biol.Unit 7 (365 KB)
Header - Biol.Unit 7
Biol.Unit 8 (365 KB)
Header - Biol.Unit 8
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