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5HV0
Asym. Unit
Info
Asym.Unit (83 KB)
Biol.Unit 1 (77 KB)
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Title
:
STRUCTURAL ANALYSIS OF COFACTOR BINDING OF A PROLYL 4-HYDROXYLASE FROM THE PATHOGENIC BACTERIUM BACILLUS ANTHRACIS
Authors
:
N. J. Schnicker, M. Dey
Date
:
28 Jan 16 (Deposition) - 04 May 16 (Release) - 18 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.63
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
P4H, Dioxygenase, Cupin, Fe(Ii)/Alpha-Ketoglutarate, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. J. Schnicker, M. Dey
Structural Analysis Of Cofactor Binding For A Prolyl 4-Hydroxylase From The Pathogenic Bacterium Bacillus Anthracis.
Acta Crystallogr D Struct V. 72 675 2016 Biol
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: 2-OXOGLUTARIC ACID (AKGa)
1b: 2-OXOGLUTARIC ACID (AKGb)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
2g: CADMIUM ION (CDg)
2h: CADMIUM ION (CDh)
2i: CADMIUM ION (CDi)
2j: CADMIUM ION (CDj)
2k: CADMIUM ION (CDk)
2l: CADMIUM ION (CDl)
2m: CADMIUM ION (CDm)
2n: CADMIUM ION (CDn)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: POTASSIUM ION (Ka)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AKG
2
Ligand/Ion
2-OXOGLUTARIC ACID
2
CD
14
Ligand/Ion
CADMIUM ION
3
GOL
2
Ligand/Ion
GLYCEROL
4
K
1
Ligand/Ion
POTASSIUM ION
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:127 , ASP A:129 , HIS A:193 , AKG A:310
binding site for residue CD A 301
02
AC2
SOFTWARE
GLU A:90 , HOH A:532
binding site for residue CD A 302
03
AC3
SOFTWARE
GLU A:51 , HOH A:403
binding site for residue CD A 303
04
AC4
SOFTWARE
HOH A:432 , HIS B:109 , ARG B:212 , HOH B:415 , HOH B:569
binding site for residue CD A 304
05
AC5
SOFTWARE
HIS A:18 , HOH A:414 , HOH A:550 , HOH A:565 , HOH A:586
binding site for residue CD A 305
06
AC6
SOFTWARE
GLU A:119 , GLY A:201 , ASP B:50 , ASP B:54
binding site for residue CD A 306
07
AC7
SOFTWARE
ASP A:121
binding site for residue CD A 307
08
AC8
SOFTWARE
GLU A:154 , GLU B:51
binding site for residue CD A 308
09
AC9
SOFTWARE
HIS A:134 , HOH A:574 , GLU B:133 , HOH B:427
binding site for residue CD A 309
10
AD1
SOFTWARE
TYR A:118 , HIS A:127 , ASP A:129 , THR A:159 , HIS A:193 , LYS A:203 , ILE A:205 , THR A:207 , TRP A:209 , CD A:301 , HOH A:437
binding site for residue AKG A 310
11
AD2
SOFTWARE
THR A:80 , SER A:82 , HIS A:114 , HOH A:551 , HOH A:576
binding site for residue K A 311
12
AD3
SOFTWARE
SER A:49 , ASP A:50 , GLU A:51 , ASP A:54 , HOH A:407 , HOH A:419 , HOH A:561
binding site for residue GOL A 312
13
AD4
SOFTWARE
HIS B:127 , ASP B:129 , HIS B:193 , AKG B:306
binding site for residue CD B 301
14
AD5
SOFTWARE
HIS B:18 , HOH B:417 , HOH B:509 , HOH B:535 , HOH B:572
binding site for residue CD B 302
15
AD6
SOFTWARE
GLY B:83 , HIS B:114 , HOH B:566 , HOH B:594 , HOH B:608
binding site for residue CD B 303
16
AD7
SOFTWARE
GLU B:119 , GLU B:202 , HOH B:432
binding site for residue CD B 304
17
AD8
SOFTWARE
GLU A:133 , HOH A:409 , HIS B:134 , HOH B:574 , HOH B:606
binding site for residue CD B 305
18
AD9
SOFTWARE
TYR B:118 , HIS B:127 , ASP B:129 , THR B:159 , HIS B:193 , LYS B:203 , ILE B:205 , THR B:207 , TRP B:209 , CD B:301
binding site for residue AKG B 306
19
AE1
SOFTWARE
MET A:174 , GLN B:31 , GLY B:45 , ASN B:46 , MET B:174 , HOH B:448 , HOH B:466
binding site for residue GOL B 307
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (83 KB)
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