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5HUQ
Biol. Unit 3
Info
Asym.Unit (146 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (139 KB)
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(1)
Title
:
A TETHERED NIACIN-DERIVED PINCER COMPLEX WITH A NICKEL-CARBON BOND IN LACTATE RACEMASE
Authors
:
B. Desguin, T. Zhang, P. Soumillion, P. Hols, J. Hu, R. P. Hausinger
Date
:
27 Jan 16 (Deposition) - 10 Feb 16 (Release) - 10 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Isomerase, Racemase, Nickel, Cofactor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Desguin, T. Zhang, P. Soumillion, P. Hols, J. Hu, R. P. Hausinger
Metalloproteins. A Tethered Niacin-Derived Pincer Complex With A Nickel-Carbon Bond In Lactate Racemase.
Science V. 349 66 2015
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Hetero Components
(2, 25)
Info
All Hetero Components
1a: 1-[(2R,3R,4S,5R)-3,4-BIS(OXIDANYL)... (4EYa)
1b: 1-[(2R,3R,4S,5R)-3,4-BIS(OXIDANYL)... (4EYb)
2a: NICKEL (II) ION (NIa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
View:
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Label:
No.
Name
Count
Type
Full Name
1
4EY
2
Ligand/Ion
1-[(2R,3R,4S,5R)-3,4-BIS(OXIDANYL)-5-(PHOSPHONOOXYMETHYL)OXOLAN-2-YL]-5-METHANETHIOYL-PYRIDINE-3-CARBOTHIOIC S-ACID
2
NI
-1
Ligand/Ion
NICKEL (II) ION
3
SO4
23
Ligand/Ion
SULFATE ION
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:71 , ASP A:72 , THR A:74 , ARG A:75 , ALA A:104 , PHE A:107 , HIS A:108 , SER A:180 , GLY A:181 , LYS A:184 , PRO A:188 , GLY A:189 , SO4 A:502
binding site for residue 4EY A 501
02
AC2
SOFTWARE
ARG A:75 , HIS A:108 , GLN A:295 , LYS A:298 , 4EY A:501
binding site for residue SO4 A 502
03
AC3
SOFTWARE
HIS A:108 , ARG A:109
binding site for residue SO4 A 503
04
AC4
SOFTWARE
ARG A:109
binding site for residue SO4 A 504
05
AC5
SOFTWARE
ARG A:320
binding site for residue SO4 A 505
06
AC6
SOFTWARE
LYS A:10 , ARG A:320
binding site for residue SO4 A 506
07
AC7
SOFTWARE
ARG A:11 , THR A:12
binding site for residue SO4 A 507
08
AC8
SOFTWARE
SER A:38 , GLU A:39
binding site for residue SO4 A 508
09
AC9
SOFTWARE
GLU A:203 , PRO A:349 , ARG A:350
binding site for residue SO4 A 509
10
AD1
SOFTWARE
GLY A:407 , GLN A:408 , ALA A:409 , ALA A:410
binding site for residue SO4 A 510
11
AD2
SOFTWARE
ARG A:98 , ARG B:98
binding site for residue SO4 A 511
12
AD3
SOFTWARE
MET A:132 , ASP A:137 , ASP B:137
binding site for residue SO4 A 512
13
AD4
SOFTWARE
PRO B:188 , HIS B:200 , 4EY B:502 , SO4 B:503
binding site for residue NI B 501
14
AD5
SOFTWARE
ARG B:75 , HIS B:108 , HIS B:174 , TYR B:294 , GLN B:295 , LYS B:298 , NI B:501 , 4EY B:502
binding site for residue SO4 B 503
15
AD6
SOFTWARE
ARG B:109 , GLN B:291 , ASN B:292 , ASP B:321 , HIS B:323
binding site for residue SO4 B 504
16
AD7
SOFTWARE
ARG B:320
binding site for residue SO4 B 505
17
AD8
SOFTWARE
GLY B:121 , GLU B:122
binding site for residue SO4 B 506
18
AD9
SOFTWARE
SER B:38 , GLU B:39 , LYS B:246
binding site for residue SO4 B 507
19
AE1
SOFTWARE
ARG B:350
binding site for residue SO4 B 508
20
AE2
SOFTWARE
GLU B:203 , PRO B:349 , ARG B:350
binding site for residue SO4 B 509
21
AE3
SOFTWARE
SER B:207 , PRO B:208
binding site for residue SO4 B 510
22
AE4
SOFTWARE
HIS B:217
binding site for residue SO4 B 511
23
AE5
SOFTWARE
ARG B:211 , VAL B:423 , LYS B:424 , ALA B:425 , SER B:426 , SO4 B:513
binding site for residue SO4 B 512
24
AE6
SOFTWARE
LYS A:143 , LYS B:424 , TRP B:427 , SO4 B:512
binding site for residue SO4 B 513
25
AE7
SOFTWARE
HIS B:371 , ARG B:405
binding site for residue SO4 B 514
26
AE8
SOFTWARE
SER B:71 , ASP B:72 , THR B:74 , ARG B:75 , ALA B:104 , THR B:105 , PHE B:107 , HIS B:108 , PHE B:170 , HIS B:174 , SER B:180 , GLY B:181 , GLY B:182 , ARG B:183 , SER B:185 , VAL B:186 , LEU B:187 , PRO B:188 , GLY B:189 , HIS B:200 , TYR B:294 , NI B:501 , SO4 B:503
binding site for Di-peptide 4EY B 502 and LYS B 184
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SAPs(SNPs)/Variants
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (146 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
Biol.Unit 3 (139 KB)
Header - Biol.Unit 3
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