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5HRO
Asym. Unit
Info
Asym.Unit (362 KB)
Biol.Unit 1 (180 KB)
Biol.Unit 2 (180 KB)
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(1)
Title
:
STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A DNA APTAMER AND AN ALPHA-CARBOXY NUCLEOSIDE PHOSPHONATE INHIBITOR (ALPHA-CNP)
Authors
:
K. Das, E. Arnold
Date
:
23 Jan 16 (Deposition) - 01 Jun 16 (Release) - 31 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,E (1x)
Biol. Unit 2: C,D,F (1x)
Keywords
:
Rt, Dna Aptamer, Ncrti, Nucleotide-Competing Rt Inhibitor, 2-O- Methylcytidine, P51, P66, Transferase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Das, J. Balzarini, M. T. Miller, A. R. Maguire, J. J. Destefano, E. Arnold
Conformational States Of Hiv-1 Reverse Transcriptase For Nucleotide Incorporation Vs Pyrophosphorolysis-Binding Of Foscarnet.
Acs Chem. Biol. V. 11 2158 2016
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Hetero Components
(5, 20)
Info
All Hetero Components
1a: [(1R)-2-METHOXY-1-{[(1S,3R)-3-(5-M... (3JYa)
1b: [(1R)-2-METHOXY-1-{[(1S,3R)-3-(5-M... (3JYb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
3a: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCa)
3b: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCb)
3c: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCc)
3d: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
5a: SUCROSE (SUCa)
5b: SUCROSE (SUCb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3JY
2
Ligand/Ion
[(1R)-2-METHOXY-1-{[(1S,3R)-3-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)CYCLOPENTYL]OXY}-2-OXOETHYL]PHOSPHONIC ACID
2
MG
6
Ligand/Ion
MAGNESIUM ION
3
OMC
4
Mod. Nucleotide
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
4
SO4
6
Ligand/Ion
SULFATE ION
5
SUC
2
Ligand/Ion
SUCROSE
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:110 , VAL A:111 , ASP A:185 , MG A:602 , 3JY A:603
binding site for residue MG A 601
02
AC2
SOFTWARE
ASP A:110 , ASP A:185 , ASP A:186 , MG A:601 , 3JY A:603 , DG E:37
binding site for residue MG A 602
03
AC3
SOFTWARE
ARG A:72 , ASP A:110 , ALA A:114 , TYR A:115 , MET A:184 , ASP A:185 , MG A:601 , MG A:602 , DA E:4 , DG E:37
binding site for residue 3JY A 603
04
AC4
SOFTWARE
ASP A:443 , ASP A:549 , HOH A:701
binding site for residue MG A 604
05
AC5
SOFTWARE
LYS A:331 , GLY A:333 , GLN A:334
binding site for residue SO4 A 605
06
AC6
SOFTWARE
VAL B:21 , ARG B:78 , GLU B:79 , LYS B:82 , GLU B:399 , GLU B:413 , TRP B:414
binding site for residue SUC B 501
07
AC7
SOFTWARE
TRP B:24 , GLU B:399 , TRP B:402
binding site for residue SO4 B 502
08
AC8
SOFTWARE
GLN B:336 , LYS B:353 , ALA B:355
binding site for residue SO4 B 503
09
AC9
SOFTWARE
GLY B:316 , TYR B:318 , LYS B:323 , GLU B:344
binding site for residue SO4 B 504
10
AD1
SOFTWARE
TRP B:266 , GLU B:328 , TYR B:342 , PHE B:346 , ASN B:348 , TRP B:426
binding site for residue SO4 B 505
11
AD2
SOFTWARE
ASP C:110 , VAL C:111 , ASP C:185 , MG C:603 , 3JY C:605
binding site for residue MG C 601
12
AD3
SOFTWARE
ASP C:443 , ASP C:549 , HOH C:701 , HOH C:702
binding site for residue MG C 602
13
AD4
SOFTWARE
ASP C:110 , ASP C:185 , ASP C:186 , MG C:601 , 3JY C:605 , DG F:37
binding site for residue MG C 603
14
AD5
SOFTWARE
LEU C:92 , VAL C:381 , ASN D:137
binding site for residue SO4 C 604
15
AD6
SOFTWARE
ARG C:72 , ASP C:110 , ASP C:113 , ALA C:114 , TYR C:115 , MET C:184 , ASP C:185 , MG C:601 , MG C:603 , DA F:4 , DG F:37
binding site for residue 3JY C 605
16
AD7
SOFTWARE
ARG D:78 , GLU D:79 , LYS D:82 , LYS D:395 , GLU D:399 , GLU D:413 , TRP D:414
binding site for residue SUC D 501
17
AD8
SOFTWARE
ARG C:78 , ASN C:81 , GLU C:89 , GLY C:152 , TRP C:153 , LYS C:154 , PRO C:157 , DA F:4 , DC F:7 , DG F:36 , DG F:37
binding site for Di-nucleotide DC F 5 and OMC F 6
18
AD9
SOFTWARE
GLU C:89 , GLN C:91 , LYS C:154 , PRO C:157 , TYR C:183 , LYS D:22 , DC F:5 , OMC F:8 , DG F:35 , DG F:36 , DG F:37
binding site for Di-nucleotide OMC F 6 and DC F 7
19
AE1
SOFTWARE
GLU C:89 , GLN C:91 , ILE C:94 , TYR C:183 , LYS D:22 , OMC F:6 , DC F:9 , DG F:34 , DG F:35 , DG F:36
binding site for Di-nucleotide DC F 7 and OMC F 8
20
AE2
SOFTWARE
ILE C:94 , LYS D:22 , DC F:7 , DC F:10 , DG F:33 , DG F:34
binding site for Di-nucleotide OMC F 8 and DC F 9
21
AE3
SOFTWARE
ILE C:94 , ARG C:448 , THR D:7 , PRO D:9 , VAL D:10 , VAL D:21 , GLN D:23 , PRO D:59 , ASP D:121 , DC F:7 , DC F:9 , DT F:21 , DG F:23 , DG F:34
binding site for Di-peptide OMC F 8 and LYS D 22
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (362 KB)
Header - Asym.Unit
Biol.Unit 1 (180 KB)
Header - Biol.Unit 1
Biol.Unit 2 (180 KB)
Header - Biol.Unit 2
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