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5HQ8
Biol. Unit 2
Info
Asym.Unit (236 KB)
Biol.Unit 1 (153 KB)
Biol.Unit 2 (79 KB)
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(1)
Title
:
CO-CRYSTAL STRUCTURE OF HUMAN SMYD3 WITH A MEKK2 PEPTIDE AT 2.13A
Authors
:
P. A. Elkins, W. G. Bonnette
Date
:
21 Jan 16 (Deposition) - 30 Mar 16 (Release) - 18 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.72
Chains
:
Asym. Unit : A,B,I,J
Biol. Unit 1: A,I (1x)
Biol. Unit 2: B,J (1x)
Keywords
:
Smyd3, Methyltransferase, Oncology, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. S. Van Aller, A. P. Graves, P. A. Elkins, W. G. Bonnette, P. J. Mcdevitt, F. Zappacosta, R. S. Annan, T. W. Dean, D. S. Su, C. L. Carpenter, H. P. Mohammad, R. G. Kruger
Structure-Based Design Of A Novel Smyd3 Inhibitor That Bridges The Sam-And Mekk2-Binding Pockets.
Structure V. 24 774 2016
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: GLYCEROL (GOLa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
4b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
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No.
Name
Count
Type
Full Name
1
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
1
Ligand/Ion
GLYCEROL
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(9, 9)
Info
All Sites
1: AC8 (SOFTWARE)
2: AC9 (SOFTWARE)
3: AD1 (SOFTWARE)
4: AD2 (SOFTWARE)
5: AD3 (SOFTWARE)
6: AD4 (SOFTWARE)
7: AD5 (SOFTWARE)
8: AD6 (SOFTWARE)
9: AD8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC8
SOFTWARE
CYS B:208 , CYS B:261 , CYS B:263 , CYS B:266
binding site for residue ZN B 501
2
AC9
SOFTWARE
CYS B:62 , CYS B:65 , HIS B:83 , CYS B:87
binding site for residue ZN B 502
3
AD1
SOFTWARE
CYS B:49 , CYS B:52 , CYS B:71 , CYS B:75
binding site for residue ZN B 503
4
AD2
SOFTWARE
PRO B:167 , PHE B:169 , HOH B:766 , HOH B:848 , HOH B:852 , HOH B:853
binding site for residue MG B 504
5
AD3
SOFTWARE
THR B:184 , CYS B:186 , ILE B:214 , PHE B:216 , HOH B:649 , GLY J:261 , GLY J:262 , HOH J:401
binding site for residue EDO B 505
6
AD4
SOFTWARE
GLN B:152 , ILE B:159 , ALA B:162 , LEU B:171 , HOH B:607 , HOH B:616 , HOH B:786
binding site for residue GOL B 506
7
AD5
SOFTWARE
CYS B:238 , LEU B:240 , MET B:242 , HIS B:366 , HOH B:762 , GLY J:262 , TYR J:264
binding site for residue EDO B 507
8
AD6
SOFTWARE
ARG B:14 , ASN B:16 , TYR B:124 , ASN B:132 , CYS B:180 , ASN B:181 , SER B:202 , LEU B:204 , ASN B:205 , HIS B:206 , TYR B:239 , TYR B:257 , PHE B:259 , HOH B:611 , HOH B:638 , HOH B:642 , HOH B:716 , HOH B:721 , HOH B:763 , LYS J:260
binding site for residue SAH B 508
9
AD8
SOFTWARE
GLU B:192 , GLY J:261 , HOH J:405
binding site for residue EDO J 301
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain B
Chain J
Asymmetric Unit 1
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Asym.Unit (236 KB)
Header - Asym.Unit
Biol.Unit 1 (153 KB)
Header - Biol.Unit 1
Biol.Unit 2 (79 KB)
Header - Biol.Unit 2
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