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Biol. Unit 3
Info
Asym.Unit (419 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (107 KB)
Biol.Unit 3 (108 KB)
Biol.Unit 4 (108 KB)
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(1)
Title
:
MODE OF BINDING OF ANTITHYROID DRUG, PROPYLTHIOURACIL TO LACTOPEROXIDASE: BINDING STUDIES AND STRUCTURE DETERMINATION
Authors
:
R. P. Singh, A. Singh, P. Sharma, P. Kaur, S. Sharma, T. P. Singh
Date
:
21 Jan 16 (Deposition) - 20 Apr 16 (Release) - 20 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. P. Singh, A. Singh, P. Sharma, P. Kaur, S. Sharma, T. P. Singh
Mode Of Binding Of Antithyroid Drug, Propylthiouracil To Lactoperoxidase: Binding Studies And Structure Determinatio
To Be Published
[
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJa)
1b: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJb)
1c: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJc)
1d: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5a: NITRATE ION (NO3a)
5b: NITRATE ION (NO3b)
5c: NITRATE ION (NO3c)
5d: NITRATE ION (NO3d)
5e: NITRATE ION (NO3e)
5f: NITRATE ION (NO3f)
5g: NITRATE ION (NO3g)
5h: NITRATE ION (NO3h)
5i: NITRATE ION (NO3i)
5j: NITRATE ION (NO3j)
5k: NITRATE ION (NO3k)
5l: NITRATE ION (NO3l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3CJ
1
Ligand/Ion
6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIMIDIN-4(1H)-ONE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NO3
3
Ligand/Ion
NITRATE ION
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Sites
(12, 12)
Info
All Sites
01: AD3 (SOFTWARE)
02: AD4 (SOFTWARE)
03: AD5 (SOFTWARE)
04: AD6 (SOFTWARE)
05: AD7 (SOFTWARE)
06: AE8 (SOFTWARE)
07: AE9 (SOFTWARE)
08: AF1 (SOFTWARE)
09: AF2 (SOFTWARE)
10: AF3 (SOFTWARE)
11: AF8 (SOFTWARE)
12: AF9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AD3
SOFTWARE
ASP C:110 , THR C:184 , PHE C:186 , ASP C:188 , SER C:190
binding site for residue CA C 605
02
AD4
SOFTWARE
PHE C:309 , ARG C:310 , TRP C:529 , TRP C:530 , GLU C:531
binding site for residue NO3 C 606
03
AD5
SOFTWARE
LEU C:92 , LYS C:402 , ASN C:403
binding site for residue NO3 C 607
04
AD6
SOFTWARE
ALA C:44 , ARG C:45 , TRP C:46 , LEU C:47 , ASN C:341 , VAL C:342 , TRP C:452
binding site for residue NO3 C 608
05
AD7
SOFTWARE
GLN C:105 , ASP C:108 , HIS C:109 , PHE C:113 , ALA C:114 , ARG C:255 , GLU C:258 , HEM C:610
binding site for residue 3CJ C 609
06
AE8
SOFTWARE
ASN B:241 , ALA B:244 , TRP B:384 , PHE C:70 , LYS C:485
binding site for Poly-Saccharide residues NAG B 602 through NAG B 603 bound to ASN B 241
07
AE9
SOFTWARE
ASN C:95 , ILE C:315 , GLN C:568 , GLY D:5 , CYS D:6
binding site for Mono-Saccharide NAG C 601 bound to ASN C 95
08
AF1
SOFTWARE
ASN C:205 , LEU C:210 , ALA C:214 , VAL C:215 , GLN C:217 , HOH C:757 , HOH C:782
binding site for Mono-Saccharide NAG C 604 bound to ASN C 205
09
AF2
SOFTWARE
PHE B:70 , LYS B:485 , ASN C:241 , THR C:243 , ALA C:244 , TRP C:384 , HOH C:714 , HOH C:731 , HOH C:746 , HOH C:807
binding site for Poly-Saccharide residues NAG C 602 through NAG C 603 bound to ASN C 241
10
AF3
SOFTWARE
CYS C:6 , GLY C:7 , ASN D:95 , ILE D:315 , HOH D:776 , HOH D:784 , HOH D:800
binding site for Mono-Saccharide NAG D 601 bound to ASN D 95
11
AF8
SOFTWARE
MET C:101 , GLY C:104 , GLN C:105 , ASP C:108 , ASP C:112 , PHE C:113 , ALA C:114 , ARG C:255 , ALA C:256 , SER C:257 , GLN C:259 , TYR C:312 , THR C:344 , PHE C:347 , ARG C:348 , GLY C:350 , HIS C:351 , VAL C:354 , PHE C:380 , PHE C:381 , LEU C:433 , ILE C:436 , ARG C:440 , 3CJ C:609
binding site for Di-peptide HEM C 610 and GLU C 258
12
AF9
SOFTWARE
MET C:101 , GLY C:104 , GLN C:105 , ILE C:106 , VAL C:107 , HIS C:109 , ASP C:110 , LEU C:111 , ASP C:112 , PHE C:113 , ALA C:114 , GLU C:258 , TYR C:312 , THR C:344 , PHE C:347 , ARG C:348 , GLY C:350 , HIS C:351 , VAL C:354 , LEU C:433 , ILE C:436 , ARG C:440 , 3CJ C:609
binding site for Di-peptide HEM C 610 and ASP C 108
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Chain C
Asymmetric Unit 1
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Asym.Unit (419 KB)
Header - Asym.Unit
Biol.Unit 1 (108 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
Biol.Unit 3 (108 KB)
Header - Biol.Unit 3
Biol.Unit 4 (108 KB)
Header - Biol.Unit 4
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