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Biol. Unit 2
Info
Asym.Unit (419 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (107 KB)
Biol.Unit 3 (108 KB)
Biol.Unit 4 (108 KB)
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(1)
Title
:
MODE OF BINDING OF ANTITHYROID DRUG, PROPYLTHIOURACIL TO LACTOPEROXIDASE: BINDING STUDIES AND STRUCTURE DETERMINATION
Authors
:
R. P. Singh, A. Singh, P. Sharma, P. Kaur, S. Sharma, T. P. Singh
Date
:
21 Jan 16 (Deposition) - 20 Apr 16 (Release) - 20 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. P. Singh, A. Singh, P. Sharma, P. Kaur, S. Sharma, T. P. Singh
Mode Of Binding Of Antithyroid Drug, Propylthiouracil To Lactoperoxidase: Binding Studies And Structure Determinatio
To Be Published
[
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJa)
1b: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJb)
1c: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJc)
1d: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5a: NITRATE ION (NO3a)
5b: NITRATE ION (NO3b)
5c: NITRATE ION (NO3c)
5d: NITRATE ION (NO3d)
5e: NITRATE ION (NO3e)
5f: NITRATE ION (NO3f)
5g: NITRATE ION (NO3g)
5h: NITRATE ION (NO3h)
5i: NITRATE ION (NO3i)
5j: NITRATE ION (NO3j)
5k: NITRATE ION (NO3k)
5l: NITRATE ION (NO3l)
View:
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Label:
No.
Name
Count
Type
Full Name
1
3CJ
1
Ligand/Ion
6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIMIDIN-4(1H)-ONE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NO3
3
Ligand/Ion
NITRATE ION
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Sites
(11, 11)
Info
All Sites
01: AC7 (SOFTWARE)
02: AC8 (SOFTWARE)
03: AC9 (SOFTWARE)
04: AD1 (SOFTWARE)
05: AD2 (SOFTWARE)
06: AE7 (SOFTWARE)
07: AE8 (SOFTWARE)
08: AF2 (SOFTWARE)
09: AF4 (SOFTWARE)
10: AF6 (SOFTWARE)
11: AF7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
ASP B:110 , THR B:184 , PHE B:186 , ASP B:188 , SER B:190
binding site for residue CA B 604
02
AC8
SOFTWARE
ARG B:45 , TRP B:46 , LEU B:47 , ASN B:341 , VAL B:342 , MET B:446 , PRO B:447 , TRP B:452
binding site for residue NO3 B 605
03
AC9
SOFTWARE
LEU B:92 , LYS B:402 , ASN B:403
binding site for residue NO3 B 606
04
AD1
SOFTWARE
GLN B:305 , ILE B:306 , PHE B:309 , ARG B:310
binding site for residue NO3 B 607
05
AD2
SOFTWARE
GLN B:105 , HIS B:109 , PHE B:113 , ARG B:255 , HEM B:608
binding site for residue 3CJ B 609
06
AE7
SOFTWARE
ASN B:205 , SER B:208 , ALA B:214 , VAL B:215 , GLN B:217 , HOH B:759
binding site for Mono-Saccharide NAG B 601 bound to ASN B 205
07
AE8
SOFTWARE
ASN B:241 , ALA B:244 , TRP B:384 , PHE C:70 , LYS C:485
binding site for Poly-Saccharide residues NAG B 602 through NAG B 603 bound to ASN B 241
08
AF2
SOFTWARE
PHE B:70 , LYS B:485 , ASN C:241 , THR C:243 , ALA C:244 , TRP C:384 , HOH C:714 , HOH C:731 , HOH C:746 , HOH C:807
binding site for Poly-Saccharide residues NAG C 602 through NAG C 603 bound to ASN C 241
09
AF4
SOFTWARE
SER B:201 , LEU B:206 , ASN D:205 , LEU D:212 , ALA D:214 , VAL D:215 , GLN D:217 , ARG D:278 , HOH D:750
binding site for Mono-Saccharide NAG D 602 bound to ASN D 205
10
AF6
SOFTWARE
MET B:101 , GLY B:104 , GLN B:105 , ILE B:106 , VAL B:107 , HIS B:109 , ASP B:110 , ASP B:112 , PHE B:113 , ALA B:114 , GLU B:258 , GLN B:259 , THR B:344 , PHE B:347 , ARG B:348 , GLY B:350 , HIS B:351 , LEU B:417 , LEU B:433 , ILE B:436 , ARG B:440 , 3CJ B:609
binding site for Di-peptide HEM B 608 and ASP B 108
11
AF7
SOFTWARE
MET B:101 , GLY B:104 , GLN B:105 , ASP B:108 , ASP B:112 , PHE B:113 , ALA B:114 , ARG B:255 , ALA B:256 , SER B:257 , GLN B:259 , THR B:344 , PHE B:347 , ARG B:348 , GLY B:350 , HIS B:351 , PHE B:380 , PHE B:381 , LEU B:417 , LEU B:433 , ILE B:436 , ARG B:440 , 3CJ B:609
binding site for Di-peptide HEM B 608 and GLU B 258
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SAPs(SNPs)/Variants
(0, 0)
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Chain B
Asymmetric Unit 1
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Asym.Unit (419 KB)
Header - Asym.Unit
Biol.Unit 1 (108 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
Biol.Unit 3 (108 KB)
Header - Biol.Unit 3
Biol.Unit 4 (108 KB)
Header - Biol.Unit 4
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