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Biol. Unit 1
Info
Asym.Unit (419 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (107 KB)
Biol.Unit 3 (108 KB)
Biol.Unit 4 (108 KB)
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(1)
Title
:
MODE OF BINDING OF ANTITHYROID DRUG, PROPYLTHIOURACIL TO LACTOPEROXIDASE: BINDING STUDIES AND STRUCTURE DETERMINATION
Authors
:
R. P. Singh, A. Singh, P. Sharma, P. Kaur, S. Sharma, T. P. Singh
Date
:
21 Jan 16 (Deposition) - 20 Apr 16 (Release) - 20 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. P. Singh, A. Singh, P. Sharma, P. Kaur, S. Sharma, T. P. Singh
Mode Of Binding Of Antithyroid Drug, Propylthiouracil To Lactoperoxidase: Binding Studies And Structure Determinatio
To Be Published
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJa)
1b: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJb)
1c: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJc)
1d: 6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIM... (3CJd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5a: NITRATE ION (NO3a)
5b: NITRATE ION (NO3b)
5c: NITRATE ION (NO3c)
5d: NITRATE ION (NO3d)
5e: NITRATE ION (NO3e)
5f: NITRATE ION (NO3f)
5g: NITRATE ION (NO3g)
5h: NITRATE ION (NO3h)
5i: NITRATE ION (NO3i)
5j: NITRATE ION (NO3j)
5k: NITRATE ION (NO3k)
5l: NITRATE ION (NO3l)
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Label:
No.
Name
Count
Type
Full Name
1
3CJ
1
Ligand/Ion
6-PROPYL-2-THIOXO-2,3-DIHYDROPYRIMIDIN-4(1H)-ONE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NO3
3
Ligand/Ion
NITRATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AE4 (SOFTWARE)
8: AE5 (SOFTWARE)
9: AE6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
binding site for residue CA A 605
2
AC2
SOFTWARE
ALA A:44 , ARG A:45 , TRP A:46 , LEU A:47 , ASN A:341 , VAL A:342 , MET A:446 , HOH A:706
binding site for residue NO3 A 606
3
AC3
SOFTWARE
LEU A:92 , LYS A:402 , ASN A:403 , HOH A:724
binding site for residue NO3 A 607
4
AC4
SOFTWARE
GLN A:305 , ILE A:306 , PHE A:309 , TRP A:530 , GLU A:531
binding site for residue NO3 A 608
5
AC5
SOFTWARE
GLN A:105 , HIS A:109 , PHE A:113 , ARG A:255 , HEM A:610
binding site for residue 3CJ A 609
6
AC6
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , GLU A:258 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , VAL A:354 , ILE A:436 , ARG A:440 , 3CJ A:609
binding site for residue HEM A 610
7
AE4
SOFTWARE
ASN A:95 , GLN A:568 , HOH A:709 , HOH A:782 , HOH A:783 , HOH A:787
binding site for Mono-Saccharide NAG A 601 bound to ASN A 95
8
AE5
SOFTWARE
ASN A:205 , SER A:208 , ALA A:214 , VAL A:215 , GLN A:217 , HOH A:701 , HOH A:764 , HOH A:779
binding site for Mono-Saccharide NAG A 602 bound to ASN A 205
9
AE6
SOFTWARE
ASN A:241 , ALA A:244 , PHE D:70
binding site for Poly-Saccharide residues NAG A 603 through NAG A 604 bound to ASN A 241
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (419 KB)
Header - Asym.Unit
Biol.Unit 1 (108 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
Biol.Unit 3 (108 KB)
Header - Biol.Unit 3
Biol.Unit 4 (108 KB)
Header - Biol.Unit 4
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