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5HP1
Asym. Unit
Info
Asym.Unit (365 KB)
Biol.Unit 1 (182 KB)
Biol.Unit 2 (181 KB)
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(1)
Title
:
STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A DNA APTAMER AND FOSCARNET, A PYROPHOSPHATE ANALOG
Authors
:
K. Das, E. Arnold
Date
:
19 Jan 16 (Deposition) - 01 Jun 16 (Release) - 31 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,F (1x)
Biol. Unit 2: C,D,E (1x)
Keywords
:
Rt, Dna Aptamer, Foscavir, N Site Complex, Pyrophosphate, Pyrophosphorolysis, Phosphonoformic Acid, Pfa, 2-O-Methylcytidine, P51, P66, Transferase, Transferase-Inhibitor-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Das, J. Balzarini, M. T. Miller, A. R. Maguire, J. J. Destefano, E. Arnold
Conformational States Of Hiv-1 Reverse Transcriptase For Nucleotide Incorporation Vs Pyrophosphorolysis-Binding Of Foscarnet.
Acs Chem. Biol. V. 11 2158 2016
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Hetero Components
(7, 22)
Info
All Hetero Components
1a: 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONO... (ATMa)
1b: 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONO... (ATMb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
4a: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCa)
4b: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCb)
4c: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCc)
4d: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCd)
5a: PHOSPHONOFORMIC ACID (PPFa)
5b: PHOSPHONOFORMIC ACID (PPFb)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
7a: SUCROSE (SUCa)
7b: SUCROSE (SUCb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATM
2
Ligand/Ion
3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
2
GOL
2
Ligand/Ion
GLYCEROL
3
MG
8
Ligand/Ion
MAGNESIUM ION
4
OMC
4
Mod. Nucleotide
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
5
PPF
2
Ligand/Ion
PHOSPHONOFORMIC ACID
6
SO4
2
Ligand/Ion
SULFATE ION
7
SUC
2
Ligand/Ion
SUCROSE
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:443 , ASP A:549 , HOH A:701
binding site for residue MG A 601
02
AC2
SOFTWARE
LYS A:65 , ARG A:72 , ASP A:110 , VAL A:111 , GLY A:112 , ASP A:113 , ALA A:114 , ASP A:185 , MG A:604 , ATM F:101
binding site for residue PPF A 602
03
AC3
SOFTWARE
ASP A:110 , ASP A:185 , ASP A:186 , MG A:604 , DG F:33 , ATM F:101
binding site for residue MG A 603
04
AC4
SOFTWARE
ASP A:110 , VAL A:111 , ASP A:185 , PPF A:602 , MG A:603 , ATM F:101
binding site for residue MG A 604
05
AC5
SOFTWARE
ASP A:443 , ASP A:498
binding site for residue MG A 605
06
AC6
SOFTWARE
LYS A:331 , GLN A:334
binding site for residue SO4 A 606
07
AC7
SOFTWARE
VAL B:21 , ARG B:78 , GLU B:79 , LYS B:82 , LYS B:395 , GLU B:399 , GLU B:413 , TRP B:414
binding site for residue SUC B 2001
08
AC8
SOFTWARE
GLY B:316 , VAL B:317 , TYR B:318 , LYS B:323 , ASN C:418
binding site for residue GOL B 2002
09
AC9
SOFTWARE
TRP B:24 , GLU B:399 , TRP B:402
binding site for residue GOL B 2003
10
AD1
SOFTWARE
LYS C:65 , ARG C:72 , ASP C:110 , VAL C:111 , ASP C:113 , LYS C:220 , MG C:604 , ATM E:101
binding site for residue PPF C 601
11
AD2
SOFTWARE
ASP C:443 , ASP C:549 , MG C:606 , HOH C:701
binding site for residue MG C 602
12
AD3
SOFTWARE
ASP C:110 , ASP C:185 , ASP C:186 , MG C:604 , DG E:33 , ATM E:101
binding site for residue MG C 603
13
AD4
SOFTWARE
ASP C:110 , VAL C:111 , ASP C:185 , PPF C:601 , MG C:603 , ATM E:101
binding site for residue MG C 604
14
AD5
SOFTWARE
LYS C:331 , GLY C:333 , GLN C:334
binding site for residue SO4 C 605
15
AD6
SOFTWARE
ASP C:443 , ASP C:498 , MG C:602
binding site for residue MG C 606
16
AD7
SOFTWARE
VAL D:21 , ARG D:78 , GLU D:79 , LYS D:82 , LYS D:395 , GLU D:399 , GLU D:413 , TRP D:414 , PHE D:416
binding site for residue SUC D 501
17
AD8
SOFTWARE
ARG C:78 , ASN C:81 , GLU C:89 , GLY C:152 , LYS C:154 , PRO C:157 , GLN C:161 , DA E:0 , DC E:3 , DG E:32 , DG E:33
binding site for Di-nucleotide DC E 1 and OMC E 2
18
AD9
SOFTWARE
GLU C:89 , GLN C:91 , ILE C:94 , LYS C:154 , PRO C:157 , GLN C:161 , DC E:1 , OMC E:4 , DG E:31 , DG E:32 , DG E:33
binding site for Di-nucleotide OMC E 2 and DC E 3
19
AE1
SOFTWARE
GLN C:91 , LEU C:92 , ILE C:94 , LYS D:22 , OMC E:2 , DC E:5 , DG E:30 , DG E:31 , DG E:32
binding site for Di-nucleotide DC E 3 and OMC E 4
20
AE2
SOFTWARE
LEU C:92 , ILE C:94 , LYS D:22 , DC E:3 , DC E:6 , DG E:29 , DG E:30 , DG E:31
binding site for Di-nucleotide OMC E 4 and DC E 5
21
AE3
SOFTWARE
ASP C:110 , ASP C:113 , ALA C:114 , TYR C:115 , TYR C:183 , ASP C:185 , ASP C:186 , PPF C:601 , MG C:603 , MG C:604 , DA E:0 , DC E:1 , OMC E:2 , DG E:32
binding site for Di-nucleotide ATM E 101 and DG E 33
22
AE4
SOFTWARE
ARG A:78 , ASN A:81 , GLU A:89 , GLY A:152 , LYS A:154 , PRO A:157 , DA F:0 , DC F:3 , DG F:32 , DG F:33 , ATM F:101
binding site for Di-nucleotide DC F 1 and OMC F 2
23
AE5
SOFTWARE
GLU A:89 , GLN A:91 , ILE A:94 , LYS A:154 , PRO A:157 , TYR A:183 , DC F:1 , OMC F:4 , DG F:31 , DG F:32 , DG F:33
binding site for Di-nucleotide OMC F 2 and DC F 3
24
AE6
SOFTWARE
GLN A:91 , LEU A:92 , ILE A:94 , TYR A:183 , LYS B:22 , OMC F:2 , DC F:5 , DG F:30 , DG F:31 , DG F:32
binding site for Di-nucleotide DC F 3 and OMC F 4
25
AE7
SOFTWARE
LEU A:92 , ILE A:94 , LYS B:22 , DC F:3 , DC F:6 , DG F:29 , DG F:30 , DG F:31
binding site for Di-nucleotide OMC F 4 and DC F 5
26
AE8
SOFTWARE
ARG A:72 , ASP A:110 , ASP A:113 , ALA A:114 , TYR A:115 , GLN A:151 , TYR A:183 , ASP A:185 , ASP A:186 , PPF A:602 , MG A:603 , MG A:604 , DA F:0 , DC F:1 , OMC F:2 , DG F:32
binding site for Di-nucleotide ATM F 101 and DG F 33
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (365 KB)
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