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5HNE
Biol. Unit 1
Info
Asym.Unit (140 KB)
Biol.Unit 1 (134 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL BRANCHED CHAIN AMINOTRANSFERASE (BCATM) COMPLEXED WITH A 2-ARYL BENZIMIDAZOLE COMPOUND AND AN INTERNAL ALDIMINE LINKED PLP COFACTOR
Authors
:
D. O. Somers
Date
:
18 Jan 16 (Deposition) - 04 May 16 (Release) - 04 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fold Type Iv, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Deng, J. Zhou, F. Sundersingh, J. A. Messer, D. O. Somers, M. Ajakane C. C. Arico-Muendel, A. Beljean, S. L. Belyanskaya, R. Bingham, E. Blazensky, A. B. Boullay, E. Boursier, J. Chai, P. Carter, C. W. Chung, A. Daugan, Y. Ding, K. Herry, C. Hobbs, E. Humphries, C. Kollmann, V. L. Nguyen, E. Nicodeme, S. E. Smith, N. Dodic, N. Ancellin
Discovery And Optimization Of Potent, Selective, And In Viv Efficacious 2-Aryl Benzimidazole Bcatm Inhibitors.
Acs Med. Chem. Lett. V. 7 379 2016
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: 1-[(1R,3S)-3-{[(5-BROMOTHIOPHEN-2-... (EL2a)
3b: 1-[(1R,3S)-3-{[(5-BROMOTHIOPHEN-2-... (EL2b)
4a: GLYCEROL (GOLa)
5a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
5b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
EL2
2
Ligand/Ion
1-[(1R,3S)-3-{[(5-BROMOTHIOPHEN-2-YL)CARBONYL]AMINO}CYCLOHEXYL]-N-METHYL-2-(PYRIDIN-2-YL)-1H-BENZIMIDAZOLE-5-CARBOXAMIDE
4
GOL
1
Ligand/Ion
GLYCEROL
5
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:99 , LYS A:202 , TYR A:207 , GLU A:237 , THR A:240 , ASN A:242 , LEU A:266 , GLY A:268 , VAL A:269 , VAL A:270 , GLY A:312 , THR A:313 , EL2 A:402 , HOH A:527 , HOH A:628 , HOH A:639
binding site for residue PLP A 401
02
AC2
SOFTWARE
PHE A:30 , LYS A:79 , GLY A:171 , TYR A:173 , VAL A:182 , LYS A:202 , GLN A:224 , VAL A:238 , GLY A:239 , THR A:240 , MET A:241 , ALA A:314 , PLP A:401 , HOH A:523 , HOH A:525 , HOH A:611
binding site for residue EL2 A 402
03
AC3
SOFTWARE
ARG A:92 , TRP A:94 , HOH A:655 , HOH A:805
binding site for residue CL A 403
04
AC4
SOFTWARE
LEU A:261 , GLY A:263 , HOH A:708
binding site for residue EDO A 404
05
AC5
SOFTWARE
TYR A:246 , ARG A:306 , GLU A:340 , ARG A:344 , HOH A:564 , HOH A:627
binding site for residue EDO A 405
06
AC6
SOFTWARE
MET A:277 , THR A:280 , HIS A:359 , TRP A:361 , HOH A:701
binding site for residue EDO A 406
07
AC7
SOFTWARE
GLN A:11 , LEU A:12 , ASP A:187 , ALA A:189 , PHE A:190 , ARG A:220
binding site for residue EDO A 407
08
AC8
SOFTWARE
GLU A:42 , LEU A:59 , THR A:60
binding site for residue EDO A 408
09
AC9
SOFTWARE
PRO A:260 , LEU A:261 , ASN A:262 , HOH A:521 , ALA B:358
binding site for residue EDO A 409
10
AD1
SOFTWARE
ARG A:106 , GLY A:196 , GLY A:197 , HOH A:503 , ILE B:191
binding site for residue EDO A 410
11
AD2
SOFTWARE
PHE B:30 , LYS B:79 , GLY B:171 , TYR B:173 , VAL B:182 , LYS B:202 , GLN B:224 , VAL B:238 , GLY B:239 , THR B:240 , MET B:241 , ALA B:314 , CYS B:318 , PLP B:401 , HOH B:517 , HOH B:577 , HOH B:650
binding site for residue EL2 B 402
12
AD3
SOFTWARE
ARG B:92 , TRP B:94 , HOH B:670 , HOH B:798
binding site for residue CL B 403
13
AD4
SOFTWARE
TYR B:246 , ARG B:306 , GLU B:340 , ARG B:344 , HOH B:576
binding site for residue EDO B 404
14
AD5
SOFTWARE
ASP B:276 , MET B:277 , THR B:280 , GLU B:348 , HIS B:359 , HOH B:502
binding site for residue EDO B 405
15
AD6
SOFTWARE
GLU B:42 , ARG B:52 , LEU B:59 , THR B:60 , LEU B:162 , HOH B:503 , HOH B:647
binding site for residue GOL B 406
16
AD7
SOFTWARE
LEU B:74 , PHE B:75 , ARG B:99 , SER B:103 , ARG B:192 , TYR B:201 , LEU B:203 , TYR B:207 , GLU B:237 , THR B:240 , ASN B:242 , LEU B:266 , GLY B:268 , VAL B:269 , VAL B:270 , GLY B:312 , THR B:313 , EL2 B:402 , HOH B:532 , HOH B:668
binding site for Di-peptide PLP B 401 and LYS B 202
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Asymmetric Unit 1
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