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5HHT
Biol. Unit 1
Info
Asym.Unit (446 KB)
Biol.Unit 1 (437 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI TRANSKETOLASE TRIPLE VARIANT SER385TYR/ASP469THR/ARG520GLN
Authors
:
S. Dai, K. Tittmann
Date
:
11 Jan 16 (Deposition) - 02 Nov 16 (Release) - 02 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Thiamin Diphosphate, Transferase, Engineered Variant, Pentose Phosphate Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. E. Affaticati, S. B. Dai, P. Payongsri, H. C. Hailes, K. Tittmann, P. A. Dalby
Structural Analysis Of An Evolved Transketolase Reveals Divergent Binding Modes.
Sci Rep V. 6 35716 2016
[
close entry info
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Hetero Components
(2, 38)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: THIAMIN DIPHOSPHATE (TDPa)
3b: THIAMIN DIPHOSPHATE (TDPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
EDO
36
Ligand/Ion
1,2-ETHANEDIOL
3
TDP
2
Ligand/Ion
THIAMIN DIPHOSPHATE
[
close Hetero Component info
]
Sites
(40, 40)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:615 , ASP A:617 , THR A:633 , HOH A:1304 , HOH A:1331 , ARG B:483 , HOH B:852
binding site for residue EDO A 701
02
AC2
SOFTWARE
ASP A:155 , ASN A:185 , ILE A:187 , TDP A:703 , HOH A:980
binding site for residue CA A 702
03
AC3
SOFTWARE
ALA A:29 , HIS A:66 , GLY A:114 , LEU A:116 , ASP A:155 , GLY A:156 , GLU A:160 , ASN A:185 , ILE A:187 , ILE A:189 , ILE A:247 , HIS A:261 , CA A:702 , HOH A:813 , HOH A:1074 , HOH A:1136 , ASP B:381 , GLU B:411 , PHE B:437 , TYR B:440 , HIS B:473
binding site for residue TDP A 703
04
AC4
SOFTWARE
LYS A:394 , ALA A:395 , GLU A:398 , HIS A:406 , HOH A:814 , HOH A:1357
binding site for residue EDO A 704
05
AC5
SOFTWARE
SER A:559 , GLU A:560 , PHE A:645 , HOH A:846 , HOH A:1010 , HOH A:1346
binding site for residue EDO A 705
06
AC6
SOFTWARE
LEU A:45 , LYS A:46 , HIS A:47 , ALA A:296 , ALA A:299 , LYS A:303 , HOH A:837 , HOH A:1001
binding site for residue EDO A 706
07
AC7
SOFTWARE
PHE A:325 , THR A:326 , HOH A:922 , HOH A:1118
binding site for residue EDO A 707
08
AC8
SOFTWARE
GLN A:136 , PHE A:137 , HOH A:829 , HOH A:942 , HOH A:1206 , HOH A:1362
binding site for residue EDO A 708
09
AC9
SOFTWARE
LEU A:45 , HIS A:47 , ASP A:58 , PHE A:60 , GLU A:110 , HOH A:1034 , HOH A:1081
binding site for residue EDO A 709
10
AD1
SOFTWARE
LYS A:21 , GLU A:85 , LYS A:88 , ASN A:89 , HOH A:812 , HOH A:832 , HOH A:943 , GLU B:598
binding site for residue EDO A 710
11
AD2
SOFTWARE
PHE A:375 , TRP A:390 , SER A:393 , ASN A:403 , TYR A:404 , TYR A:430
binding site for residue EDO A 711
12
AD3
SOFTWARE
GLU A:110 , LEU A:423 , EDO A:717 , HOH A:824
binding site for residue EDO A 712
13
AD4
SOFTWARE
PRO A:352 , ALA A:353 , LYS A:354 , ALA A:524 , GLN A:525 , HOH A:859 , SER B:305 , GLU B:309
binding site for residue EDO A 713
14
AD5
SOFTWARE
HIS A:192 , GLY A:256 , HOH A:889 , HOH A:929 , HOH A:1062
binding site for residue EDO A 714
15
AD6
SOFTWARE
LYS A:131 , THR A:172 , LYS A:174 , ASN A:397 , HOH A:1159 , HOH A:1216
binding site for residue EDO A 715
16
AD7
SOFTWARE
ILE A:345 , LEU A:533 , ALA A:534 , ILE A:536 , ALA A:537 , HOH A:940
binding site for residue EDO A 716
17
AD8
SOFTWARE
PRO A:52 , ALA A:107 , GLY A:108 , VAL A:109 , EDO A:712
binding site for residue EDO A 717
18
AD9
SOFTWARE
GLU B:6 , GLY B:278 , TRP B:279 , LYS B:280 , TYR B:281 , HOH B:1015 , HOH B:1252
binding site for residue EDO B 701
19
AE1
SOFTWARE
ALA B:271 , TYR B:505 , GLU B:508 , ARG B:509 , EDO B:722 , HOH B:888 , HOH B:1007
binding site for residue EDO B 702
20
AE2
SOFTWARE
ARG B:274 , GLU B:275 , TRP B:279 , ARG B:538 , GLN B:592 , HOH B:929 , HOH B:1030 , HOH B:1152
binding site for residue EDO B 703
21
AE3
SOFTWARE
LEU B:272 , GLU B:275 , ARG B:509 , ASP B:511 , LYS B:591 , HOH B:1178
binding site for residue EDO B 704
22
AE4
SOFTWARE
PHE B:375 , TRP B:390 , SER B:393 , ASN B:403 , TYR B:404 , TYR B:430 , HOH B:1116
binding site for residue EDO B 705
23
AE5
SOFTWARE
PRO B:52 , GLY B:108 , VAL B:109
binding site for residue EDO B 706
24
AE6
SOFTWARE
SER B:559 , GLU B:560 , PHE B:650 , HOH B:853 , HOH B:1208
binding site for residue EDO B 707
25
AE7
SOFTWARE
LYS B:131 , THR B:172 , LEU B:173 , LYS B:174 , HOH B:990 , HOH B:1168 , HOH B:1213
binding site for residue EDO B 708
26
AE8
SOFTWARE
LEU B:435 , ASP B:462 , PRO B:475 , VAL B:479 , ARG B:492 , ALA B:613 , GLY B:614 , HOH B:1173
binding site for residue EDO B 709
27
AE9
SOFTWARE
PHE B:311 , THR B:326 , EDO B:720 , HOH B:937
binding site for residue EDO B 710
28
AF1
SOFTWARE
ASP A:381 , GLU A:411 , PHE A:437 , TYR A:440 , HIS A:473 , ALA B:29 , HIS B:66 , GLY B:114 , LEU B:116 , ASP B:155 , GLY B:156 , GLU B:160 , ASN B:185 , ILE B:187 , ILE B:189 , ILE B:247 , HIS B:261 , CA B:712 , HOH B:837 , HOH B:865 , HOH B:1190
binding site for residue TDP B 711
29
AF2
SOFTWARE
ASP B:155 , ASN B:185 , ILE B:187 , TDP B:711 , HOH B:997
binding site for residue CA B 712
30
AF3
SOFTWARE
ASP B:399 , HOH B:838 , HOH B:914 , HOH B:936 , HOH B:1198 , HOH B:1310
binding site for residue EDO B 713
31
AF4
SOFTWARE
TYR B:182 , ASP B:184 , PHE B:197 , ASP B:199 , THR B:201 , HOH B:802 , HOH B:907 , HOH B:1144
binding site for residue EDO B 714
32
AF5
SOFTWARE
LYS A:23 , GLU B:468 , HOH B:825 , HOH B:826 , HOH B:995
binding site for residue EDO B 715
33
AF6
SOFTWARE
LYS B:21 , LYS B:88 , GLN B:92 , HOH B:935 , HOH B:954 , HOH B:961
binding site for residue EDO B 716
34
AF7
SOFTWARE
LYS B:394 , ALA B:395 , GLU B:398 , HIS B:406 , HOH B:906
binding site for residue EDO B 717
35
AF8
SOFTWARE
LEU B:45 , HIS B:47 , ARG B:57 , ASP B:58 , PHE B:60 , GLU B:110 , HOH B:916 , HOH B:1133
binding site for residue EDO B 718
36
AF9
SOFTWARE
ARG B:358 , PRO B:384 , TYR B:385 , HOH B:817 , HOH B:862
binding site for residue EDO B 719
37
AG1
SOFTWARE
SER B:53 , ALA B:55 , MET B:329 , EDO B:710 , HOH B:807
binding site for residue EDO B 720
38
AG2
SOFTWARE
LYS B:254 , ASP B:259 , ALA B:263 , PRO B:264 , HOH B:1164
binding site for residue EDO B 721
39
AG3
SOFTWARE
ALA B:271 , GLU B:275 , EDO B:702 , HOH B:999
binding site for residue EDO B 722
40
AG4
SOFTWARE
ILE B:246 , PHE B:249 , GLY B:250 , ALA B:255 , GLN B:276 , HOH B:1019
binding site for residue EDO B 723
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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