PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
5GTH
Biol. Unit 1
Info
Asym.Unit (2.2 MB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
Biol.Unit 2, α-C (1.1 MB)
Biol.Unit 2 (1.1 MB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (DARK DATASET)
Authors
:
M. Suga, J. R. Shen
Date
:
20 Aug 16 (Deposition) - 15 Mar 17 (Release) - 15 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,H,I,J,K,L,M,O,R,T,U,V,X,Y,Z,a,b,c,d,e,f,h,i,j,k,l,m,o,t,u,v,x,y,z
Biol. Unit 1: A,B,C,D,E,F,H,I,J,K,L,M,O,R,T,U,V,X,Y,Z (1x)
Biol. Unit 2: a,b,c,d,e,f,h,i,j,k,l,m,o,t,u,v,x,y,z (1x)
Keywords
:
Photosystem Ii, Photosynthesis, Psii, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Suga, F. Akita, M. Sugahara, M. Kubo, Y. Nakajima, T. Nakane, K. Yamashita, Y. Umena, M. Nakabayashi, T. Yamane, T. Nakano, M. Suzuki, T. Masuda, S. Inoue, T. Kimura, T. Nomura, S. Yonekura, L. J. Yu, T. Sakamoto, T. Motomura, J. H. Chen, Y. Kato, T. Noguchi, K. Tono, Y. Joti, T. Kameshima, T. Hatsui, E. Nango, R. Tanaka, H. Naitow, Y. Matsuura, A. Yamashita, M. Yamamoto, O. Nureki, M. Yabashi, T. Ishikawa, S. Iwata, J. R. Shen
Light-Induced Structural Changes And The Site Of O=O Bond Formation In Psii Caught By Xfel.
Nature V. 543 131 2017
[
close entry info
]
Hetero Components
(17, 108)
Info
All Hetero Components
01a: BETA-CAROTENE (BCRa)
01b: BETA-CAROTENE (BCRb)
01c: BETA-CAROTENE (BCRc)
01d: BETA-CAROTENE (BCRd)
01e: BETA-CAROTENE (BCRe)
01f: BETA-CAROTENE (BCRf)
01g: BETA-CAROTENE (BCRg)
01h: BETA-CAROTENE (BCRh)
01i: BETA-CAROTENE (BCRi)
01j: BETA-CAROTENE (BCRj)
01k: BETA-CAROTENE (BCRk)
01l: BETA-CAROTENE (BCRl)
01m: BETA-CAROTENE (BCRm)
01n: BETA-CAROTENE (BCRn)
01o: BETA-CAROTENE (BCRo)
01p: BETA-CAROTENE (BCRp)
01q: BETA-CAROTENE (BCRq)
01r: BETA-CAROTENE (BCRr)
01s: BETA-CAROTENE (BCRs)
01t: BETA-CAROTENE (BCRt)
01u: BETA-CAROTENE (BCRu)
01v: BETA-CAROTENE (BCRv)
02a: BICARBONATE ION (BCTa)
02b: BICARBONATE ION (BCTb)
03a: CALCIUM ION (CAa)
03b: CALCIUM ION (CAb)
03c: CALCIUM ION (CAc)
03d: CALCIUM ION (CAd)
03e: CALCIUM ION (CAe)
03f: CALCIUM ION (CAf)
05a: CHLOROPHYLL A (CLAa)
05aa: CHLOROPHYLL A (CLAaa)
05ab: CHLOROPHYLL A (CLAab)
05ac: CHLOROPHYLL A (CLAac)
05ad: CHLOROPHYLL A (CLAad)
05ae: CHLOROPHYLL A (CLAae)
05af: CHLOROPHYLL A (CLAaf)
05ag: CHLOROPHYLL A (CLAag)
05ah: CHLOROPHYLL A (CLAah)
05ai: CHLOROPHYLL A (CLAai)
05aj: CHLOROPHYLL A (CLAaj)
05ak: CHLOROPHYLL A (CLAak)
05al: CHLOROPHYLL A (CLAal)
05am: CHLOROPHYLL A (CLAam)
05an: CHLOROPHYLL A (CLAan)
05ao: CHLOROPHYLL A (CLAao)
05ap: CHLOROPHYLL A (CLAap)
05aq: CHLOROPHYLL A (CLAaq)
05ar: CHLOROPHYLL A (CLAar)
05as: CHLOROPHYLL A (CLAas)
05at: CHLOROPHYLL A (CLAat)
05au: CHLOROPHYLL A (CLAau)
05av: CHLOROPHYLL A (CLAav)
05aw: CHLOROPHYLL A (CLAaw)
05ax: CHLOROPHYLL A (CLAax)
05ay: CHLOROPHYLL A (CLAay)
05az: CHLOROPHYLL A (CLAaz)
05b: CHLOROPHYLL A (CLAb)
05ba: CHLOROPHYLL A (CLAba)
05bb: CHLOROPHYLL A (CLAbb)
05bc: CHLOROPHYLL A (CLAbc)
05bd: CHLOROPHYLL A (CLAbd)
05be: CHLOROPHYLL A (CLAbe)
05bf: CHLOROPHYLL A (CLAbf)
05bg: CHLOROPHYLL A (CLAbg)
05bh: CHLOROPHYLL A (CLAbh)
05bi: CHLOROPHYLL A (CLAbi)
05bj: CHLOROPHYLL A (CLAbj)
05bk: CHLOROPHYLL A (CLAbk)
05bl: CHLOROPHYLL A (CLAbl)
05bm: CHLOROPHYLL A (CLAbm)
05bn: CHLOROPHYLL A (CLAbn)
05bo: CHLOROPHYLL A (CLAbo)
05bp: CHLOROPHYLL A (CLAbp)
05bq: CHLOROPHYLL A (CLAbq)
05br: CHLOROPHYLL A (CLAbr)
05c: CHLOROPHYLL A (CLAc)
05d: CHLOROPHYLL A (CLAd)
05e: CHLOROPHYLL A (CLAe)
05f: CHLOROPHYLL A (CLAf)
05g: CHLOROPHYLL A (CLAg)
05h: CHLOROPHYLL A (CLAh)
05i: CHLOROPHYLL A (CLAi)
05j: CHLOROPHYLL A (CLAj)
05k: CHLOROPHYLL A (CLAk)
05l: CHLOROPHYLL A (CLAl)
05m: CHLOROPHYLL A (CLAm)
05n: CHLOROPHYLL A (CLAn)
05o: CHLOROPHYLL A (CLAo)
05p: CHLOROPHYLL A (CLAp)
05q: CHLOROPHYLL A (CLAq)
05r: CHLOROPHYLL A (CLAr)
05s: CHLOROPHYLL A (CLAs)
05t: CHLOROPHYLL A (CLAt)
05u: CHLOROPHYLL A (CLAu)
05v: CHLOROPHYLL A (CLAv)
05w: CHLOROPHYLL A (CLAw)
05x: CHLOROPHYLL A (CLAx)
05y: CHLOROPHYLL A (CLAy)
05z: CHLOROPHYLL A (CLAz)
04a: CHLORIDE ION (CLa)
05b: CHLORIDE ION (CLb)
05c: CHLORIDE ION (CLc)
05d: CHLORIDE ION (CLd)
06a: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDa)
06b: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDb)
06c: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDc)
06d: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDd)
06e: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDe)
06f: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDf)
06g: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDg)
06h: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDh)
07a: FE (II) ION (FE2a)
07b: FE (II) ION (FE2b)
08a: N-FORMYLMETHIONINE (FMEa)
08b: N-FORMYLMETHIONINE (FMEb)
08c: N-FORMYLMETHIONINE (FMEc)
08d: N-FORMYLMETHIONINE (FMEd)
08e: N-FORMYLMETHIONINE (FMEe)
08f: N-FORMYLMETHIONINE (FMEf)
09a: GLYCEROL (GOLa)
09b: GLYCEROL (GOLb)
09c: GLYCEROL (GOLc)
09d: GLYCEROL (GOLd)
09e: GLYCEROL (GOLe)
09f: GLYCEROL (GOLf)
09g: GLYCEROL (GOLg)
10a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
10b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
10c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
10d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
11a: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGa)
11b: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGb)
11c: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGc)
11d: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGd)
11e: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGe)
11f: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGf)
11g: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGg)
11h: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGh)
11i: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGi)
11j: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGj)
11k: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGk)
11l: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGl)
11m: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGm)
11n: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGn)
11o: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGo)
12a: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGa)
12b: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGb)
12c: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGc)
12d: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGd)
12e: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGe)
12f: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGf)
12g: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGg)
12h: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGh)
12i: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGi)
12j: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGj)
13a: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGL... (LMGa)
13b: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGL... (LMGb)
13c: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGL... (LMGc)
13d: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGL... (LMGd)
13e: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGL... (LMGe)
13f: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGL... (LMGf)
13g: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGL... (LMGg)
13h: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGL... (LMGh)
13i: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGL... (LMGi)
13j: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGL... (LMGj)
13k: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGL... (LMGk)
13l: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGL... (LMGl)
14a: DODECYL-BETA-D-MALTOSIDE (LMTa)
14b: DODECYL-BETA-D-MALTOSIDE (LMTb)
14c: DODECYL-BETA-D-MALTOSIDE (LMTc)
14d: DODECYL-BETA-D-MALTOSIDE (LMTd)
14e: DODECYL-BETA-D-MALTOSIDE (LMTe)
14f: DODECYL-BETA-D-MALTOSIDE (LMTf)
14g: DODECYL-BETA-D-MALTOSIDE (LMTg)
14h: DODECYL-BETA-D-MALTOSIDE (LMTh)
14i: DODECYL-BETA-D-MALTOSIDE (LMTi)
14j: DODECYL-BETA-D-MALTOSIDE (LMTj)
14k: DODECYL-BETA-D-MALTOSIDE (LMTk)
14l: DODECYL-BETA-D-MALTOSIDE (LMTl)
14m: DODECYL-BETA-D-MALTOSIDE (LMTm)
14n: DODECYL-BETA-D-MALTOSIDE (LMTn)
15a: MAGNESIUM ION (MGa)
15b: MAGNESIUM ION (MGb)
16a: CA-MN4-O5 CLUSTER (OEXa)
16b: CA-MN4-O5 CLUSTER (OEXb)
17a: PHEOPHYTIN A (PHOa)
17b: PHEOPHYTIN A (PHOb)
17c: PHEOPHYTIN A (PHOc)
17d: PHEOPHYTIN A (PHOd)
18a: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27... (PL9a)
18b: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27... (PL9b)
18c: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27... (PL9c)
18d: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27... (PL9d)
19a: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO... (SQDa)
19b: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO... (SQDb)
19c: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO... (SQDc)
19d: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO... (SQDd)
19e: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO... (SQDe)
19f: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO... (SQDf)
19g: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO... (SQDg)
19h: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO... (SQDh)
20a: UNKNOWN LIGAND (UNLa)
20b: UNKNOWN LIGAND (UNLb)
20c: UNKNOWN LIGAND (UNLc)
20d: UNKNOWN LIGAND (UNLd)
20e: UNKNOWN LIGAND (UNLe)
20f: UNKNOWN LIGAND (UNLf)
20g: UNKNOWN LIGAND (UNLg)
20h: UNKNOWN LIGAND (UNLh)
20i: UNKNOWN LIGAND (UNLi)
20j: UNKNOWN LIGAND (UNLj)
20k: UNKNOWN LIGAND (UNLk)
20l: UNKNOWN LIGAND (UNLl)
20m: UNKNOWN LIGAND (UNLm)
20n: UNKNOWN LIGAND (UNLn)
20o: UNKNOWN LIGAND (UNLo)
20p: UNKNOWN LIGAND (UNLp)
20q: UNKNOWN LIGAND (UNLq)
20r: UNKNOWN LIGAND (UNLr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCR
11
Ligand/Ion
BETA-CAROTENE
2
BCT
1
Ligand/Ion
BICARBONATE ION
3
CA
-1
Ligand/Ion
CALCIUM ION
4
CL
-1
Ligand/Ion
CHLORIDE ION
5
CLA
35
Ligand/Ion
CHLOROPHYLL A
6
DGD
4
Ligand/Ion
DIGALACTOSYL DIACYL GLYCEROL (DGDG)
7
FE2
1
Ligand/Ion
FE (II) ION
8
FME
3
Mod. Amino Acid
N-FORMYLMETHIONINE
9
GOL
4
Ligand/Ion
GLYCEROL
10
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
11
HTG
8
Ligand/Ion
HEPTYL 1-THIOHEXOPYRANOSIDE
12
LHG
5
Ligand/Ion
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
13
LMG
6
Ligand/Ion
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
14
LMT
9
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
15
MG
-1
Ligand/Ion
MAGNESIUM ION
16
OEX
1
Ligand/Ion
CA-MN4-O5 CLUSTER
17
PHO
2
Ligand/Ion
PHEOPHYTIN A
18
PL9
2
Ligand/Ion
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE
19
SQD
5
Ligand/Ion
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
20
UNL
9
Ligand/Ion
UNKNOWN LIGAND
[
close Hetero Component info
]
Sites
(114, 114)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: AD1 (SOFTWARE)
011: AD2 (SOFTWARE)
012: AD3 (SOFTWARE)
013: AD4 (SOFTWARE)
014: AD5 (SOFTWARE)
015: AD6 (SOFTWARE)
016: AD7 (SOFTWARE)
017: AD8 (SOFTWARE)
018: AD9 (SOFTWARE)
019: AE1 (SOFTWARE)
020: AE2 (SOFTWARE)
021: AE3 (SOFTWARE)
022: AE4 (SOFTWARE)
023: AE5 (SOFTWARE)
024: AE6 (SOFTWARE)
025: AE7 (SOFTWARE)
026: AE8 (SOFTWARE)
027: AE9 (SOFTWARE)
028: AF1 (SOFTWARE)
029: AF2 (SOFTWARE)
030: AF3 (SOFTWARE)
031: AF4 (SOFTWARE)
032: AF5 (SOFTWARE)
033: AF6 (SOFTWARE)
034: AF7 (SOFTWARE)
035: AF8 (SOFTWARE)
036: AF9 (SOFTWARE)
037: AG1 (SOFTWARE)
038: AG2 (SOFTWARE)
039: AG3 (SOFTWARE)
040: AG4 (SOFTWARE)
041: AG5 (SOFTWARE)
042: AG6 (SOFTWARE)
043: AG7 (SOFTWARE)
044: AG8 (SOFTWARE)
045: AG9 (SOFTWARE)
046: AH1 (SOFTWARE)
047: AH2 (SOFTWARE)
048: AH3 (SOFTWARE)
049: AH4 (SOFTWARE)
050: AH5 (SOFTWARE)
051: AH6 (SOFTWARE)
052: AH7 (SOFTWARE)
053: AH8 (SOFTWARE)
054: AH9 (SOFTWARE)
055: AI1 (SOFTWARE)
056: AI2 (SOFTWARE)
057: AI3 (SOFTWARE)
058: AI4 (SOFTWARE)
059: AI5 (SOFTWARE)
060: AI6 (SOFTWARE)
061: AI7 (SOFTWARE)
062: AI8 (SOFTWARE)
063: AI9 (SOFTWARE)
064: AJ1 (SOFTWARE)
065: AJ2 (SOFTWARE)
066: AJ3 (SOFTWARE)
067: AJ4 (SOFTWARE)
068: AJ5 (SOFTWARE)
069: AJ6 (SOFTWARE)
070: AJ7 (SOFTWARE)
071: AJ8 (SOFTWARE)
072: AJ9 (SOFTWARE)
073: AK1 (SOFTWARE)
074: AK2 (SOFTWARE)
075: AK3 (SOFTWARE)
076: AK4 (SOFTWARE)
077: AK5 (SOFTWARE)
078: AK6 (SOFTWARE)
079: AK7 (SOFTWARE)
080: AK8 (SOFTWARE)
081: AK9 (SOFTWARE)
082: AL1 (SOFTWARE)
083: AL2 (SOFTWARE)
084: AL3 (SOFTWARE)
085: AL4 (SOFTWARE)
086: AL5 (SOFTWARE)
087: AL6 (SOFTWARE)
088: AL7 (SOFTWARE)
089: AL8 (SOFTWARE)
090: AL9 (SOFTWARE)
091: AM1 (SOFTWARE)
092: AM2 (SOFTWARE)
093: AM3 (SOFTWARE)
094: AM4 (SOFTWARE)
095: AM5 (SOFTWARE)
096: AM6 (SOFTWARE)
097: AM7 (SOFTWARE)
098: AM8 (SOFTWARE)
099: AM9 (SOFTWARE)
100: AN1 (SOFTWARE)
101: AN2 (SOFTWARE)
102: AN3 (SOFTWARE)
103: AO5 (SOFTWARE)
104: AO6 (SOFTWARE)
105: AQ7 (SOFTWARE)
106: AR2 (SOFTWARE)
107: AR3 (SOFTWARE)
108: AR4 (SOFTWARE)
109: AR9 (SOFTWARE)
110: AS1 (SOFTWARE)
111: AS2 (SOFTWARE)
112: AW4 (SOFTWARE)
113: AX2 (SOFTWARE)
114: AX4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
HIS A:215 , HIS A:272 , BCT A:418 , HIS D:214 , HIS D:268
binding site for residue FE2 A 401
002
AC2
SOFTWARE
ASN A:181 , GLU A:333 , LYS D:317 , HOH D:591
binding site for residue CL A 402
003
AC3
SOFTWARE
ASN A:338 , PHE A:339 , GLY C:353 , GLU C:354
binding site for residue CL A 403
004
AC4
SOFTWARE
PRO A:150 , SER A:153 , VAL A:157 , MET A:183 , PHE A:186 , GLN A:187 , ILE A:192 , LEU A:193 , HIS A:198 , GLY A:201 , PHE A:206 , ALA A:286 , ALA A:287 , ILE A:290 , CLA A:405 , CLA A:406 , LEU D:182 , LEU D:205 , PHO D:401 , CLA D:404 , PHE T:17
binding site for residue CLA A 404
005
AC5
SOFTWARE
VAL A:157 , PHE A:158 , MET A:172 , ILE A:176 , THR A:179 , PHE A:180 , MET A:183 , CLA A:404 , HOH A:594 , HOH A:599 , MET D:198 , VAL D:201 , ALA D:202 , PHO D:401 , PL9 D:407 , HOH D:530
binding site for residue CLA A 405
006
AC6
SOFTWARE
GLN A:199 , VAL A:202 , ALA A:203 , GLY A:207 , LEU A:210 , TRP A:278 , CLA A:404 , PHO A:407 , PL9 A:414 , HOH A:540 , HOH A:583 , HOH A:606 , DGD C:519 , PHE D:157 , VAL D:175 , ILE D:178 , PHE D:179 , LEU D:182 , CLA D:404
binding site for residue CLA A 406
007
AC7
SOFTWARE
PHE A:206 , LEU A:210 , MET A:214 , CLA A:406 , PL9 A:414 , ALA D:41 , TRP D:48 , GLY D:121 , LEU D:122 , PHE D:125 , GLN D:129 , ASN D:142 , PHE D:146 , PRO D:275 , CLA D:404
binding site for residue PHO A 407
008
AC8
SOFTWARE
ILE A:36 , PRO A:39 , THR A:40 , PHE A:93 , PRO A:95 , ILE A:96 , TRP A:97 , LEU A:114 , HIS A:118 , LEU A:121 , BCR A:409 , LMG C:501 , CLA C:506 , CLA C:507 , DGD C:517 , VAL I:8 , VAL I:12 , THR I:13 , PHE I:15
binding site for residue CLA A 408
009
AC9
SOFTWARE
LEU A:42 , ALA A:43 , ILE A:46 , CLA A:408
binding site for residue BCR A 409
010
AD1
SOFTWARE
LEU A:200 , GLY A:204 , ASN A:267 , SER A:270 , PHE A:274 , ALA A:277 , TRP A:278 , VAL A:281 , GLN C:28 , ALA C:34 , TRP C:36 , SER D:230 , PHE D:232 , LHG D:409 , ALA K:34
binding site for residue SQD A 410
011
AD2
SOFTWARE
ASP A:103 , TRP b:75 , HTG b:625 , HTG b:628 , HOH b:826
binding site for residue GOL A 411
012
AD3
SOFTWARE
TRP A:20 , ASN A:26 , ARG A:27 , LEU A:28 , THR A:45 , PHE T:22 , BCR T:101 , LEU b:109 , TRP b:113 , TYR b:117 , BCR b:619
binding site for residue SQD A 412
013
AD4
SOFTWARE
ASP A:170 , GLU A:189 , HIS A:332 , GLU A:333 , HIS A:337 , ASP A:342 , ALA A:344 , HOH A:505 , HOH A:530 , HOH A:534 , HOH A:560 , HOH A:573 , HOH A:614 , GLU C:354 , ARG C:357
binding site for residue OEX A 413
014
AD5
SOFTWARE
PHE A:211 , MET A:214 , HIS A:215 , LEU A:218 , ILE A:248 , PHE A:255 , SER A:264 , PHE A:265 , LEU A:271 , PHE A:274 , CLA A:406 , PHO A:407 , CLA D:404 , SQD D:413 , LHG E:101 , ALA F:22 , THR F:25 , LEU F:26 , THR X:24 , LEU X:28
binding site for residue PL9 A 414
015
AD6
SOFTWARE
SER A:232 , ASN A:234 , LHG A:417 , HOH A:511 , TRP B:5 , TYR B:6 , ARG B:7 , PHE B:464 , TRP B:468 , PHE B:479 , CLA B:611 , CLA B:613 , ARG D:139 , TYR D:141 , ILE D:144 , TRP D:266 , PHE D:269 , MET D:281 , HOH D:564
binding site for residue LHG A 416
016
AD7
SOFTWARE
SER A:232 , ASN A:234 , LHG A:416 , PRO B:4 , TRP B:5 , TYR B:6 , LMG B:621 , TRP D:266 , PL9 D:407 , LHG D:408 , GLU L:11 , LEU L:12 , ASN L:13 , SER L:16 , PRO M:18
binding site for residue LHG A 417
017
AD8
SOFTWARE
HIS A:215 , GLU A:244 , TYR A:246 , HIS A:272 , FE2 A:401 , HIS D:214 , TYR D:244 , HIS D:268
binding site for residue BCT A 418
018
AD9
SOFTWARE
TRP B:185 , GLY B:186 , PHE B:190 , CLA B:602 , HTG B:624 , HOH B:809 , PHE H:41 , BCR H:101
binding site for residue CLA B 601
019
AE1
SOFTWARE
GLY B:189 , PHE B:190 , GLY B:197 , HIS B:201 , ALA B:204 , VAL B:208 , PHE B:250 , CLA B:601 , CLA B:603 , HOH B:774 , ILE D:159 , ILE H:45 , LEU H:46 , TYR H:49 , DGD H:102
binding site for residue CLA B 602
020
AE2
SOFTWARE
ARG B:68 , LEU B:69 , ALA B:146 , CYS B:150 , PHE B:153 , HIS B:201 , HIS B:202 , VAL B:252 , THR B:262 , CLA B:602 , CLA B:604 , CLA B:605 , CLA B:606 , CLA B:608 , HOH B:728
binding site for residue CLA B 603
021
AE3
SOFTWARE
TRP B:33 , PHE B:61 , PHE B:65 , ARG B:68 , LEU B:148 , VAL B:245 , ALA B:248 , ALA B:249 , VAL B:252 , PHE B:451 , HIS B:455 , PHE B:458 , PHE B:462 , CLA B:603 , CLA B:605 , CLA B:607 , CLA B:611 , CLA B:613
binding site for residue CLA B 604
022
AE4
SOFTWARE
THR B:27 , VAL B:30 , ALA B:34 , VAL B:62 , PHE B:65 , MET B:66 , ARG B:68 , LEU B:69 , HIS B:100 , LEU B:103 , ALA B:205 , CLA B:603 , CLA B:604 , CLA B:606 , CLA B:610 , CLA B:612 , CLA B:615 , HOH B:731
binding site for residue CLA B 605
023
AE5
SOFTWARE
LEU B:69 , GLY B:70 , TRP B:91 , VAL B:96 , HIS B:100 , VAL B:102 , LEU B:149 , GLY B:152 , PHE B:153 , PHE B:156 , HIS B:157 , PHE B:162 , GLY B:163 , PRO B:164 , CLA B:603 , CLA B:605 , CLA B:616 , BCR B:619 , SQD a:412
binding site for residue CLA B 606
024
AE6
SOFTWARE
TRP B:33 , TYR B:40 , GLN B:58 , GLY B:59 , MET B:60 , PHE B:61 , LEU B:324 , THR B:327 , GLY B:328 , PRO B:329 , TRP B:450 , PHE B:451 , CLA B:604 , CLA B:613 , BCR B:618 , LMG B:621 , HOH B:844
binding site for residue CLA B 607
025
AE7
SOFTWARE
LEU B:229 , THR B:236 , SER B:239 , ALA B:243 , PHE B:463 , HIS B:466 , ILE B:467 , LEU B:474 , CLA B:603 , CLA B:609 , CLA B:610 , HOH B:823 , LEU D:89 , PHE D:120 , MET D:126 , ILE D:150 , CLA D:405 , DGD H:102
binding site for residue CLA B 608
026
AE8
SOFTWARE
PHE B:139 , VAL B:208 , ALA B:212 , PHE B:215 , HIS B:216 , VAL B:219 , ARG B:220 , PRO B:221 , PRO B:222 , LEU B:225 , LEU B:229 , CLA B:608 , CLA B:610 , THR H:27 , MET H:31 , LEU H:43 , BCR H:101
binding site for residue CLA B 609
027
AE9
SOFTWARE
LEU B:135 , MET B:138 , PHE B:139 , HIS B:142 , LEU B:143 , MET B:231 , VAL B:237 , SER B:240 , SER B:241 , CLA B:605 , CLA B:608 , CLA B:609 , CLA B:612 , CLA B:615 , HOH B:713
binding site for residue CLA B 610
028
AF1
SOFTWARE
LHG A:416 , HOH A:511 , TYR B:6 , ARG B:7 , VAL B:8 , HIS B:9 , THR B:10 , LEU B:238 , ILE B:242 , LEU B:461 , PHE B:462 , GLY B:465 , TRP B:468 , HIS B:469 , ARG B:472 , CLA B:604 , CLA B:612 , CLA B:613 , CLA B:614
binding site for residue CLA B 611
029
AF2
SOFTWARE
HIS B:9 , LEU B:19 , HIS B:23 , HIS B:26 , THR B:27 , ILE B:234 , VAL B:237 , LEU B:238 , SER B:241 , VAL B:245 , CLA B:605 , CLA B:610 , CLA B:611 , CLA B:613 , CLA B:614 , CLA B:615
binding site for residue CLA B 612
030
AF3
SOFTWARE
LHG A:416 , HIS B:9 , HIS B:26 , VAL B:30 , TRP B:33 , PHE B:462 , CLA B:604 , CLA B:607 , CLA B:611 , CLA B:612 , CLA B:614 , BCR B:617 , BCR B:618
binding site for residue CLA B 613
031
AF4
SOFTWARE
VAL B:8 , HIS B:9 , VAL B:11 , LEU B:29 , CLA B:611 , CLA B:612 , CLA B:613 , BCR B:617 , LMG B:621 , VAL L:10 , PHE M:21 , LEU M:25 , LMT m:102 , HOH m:206 , PHE t:8
binding site for residue CLA B 614
032
AF5
SOFTWARE
ILE B:20 , HIS B:23 , LEU B:24 , LEU B:133 , MET B:138 , HIS B:142 , LEU B:145 , CLA B:605 , CLA B:610 , CLA B:612 , CLA B:616 , LEU H:14
binding site for residue CLA B 615
033
AF6
SOFTWARE
LEU B:24 , TRP B:113 , HIS B:114 , CLA B:606 , CLA B:615 , BCR B:619 , HOH B:785 , THR H:5 , GLY H:8
binding site for residue CLA B 616
034
AF7
SOFTWARE
MET B:25 , LEU B:29 , TRP B:115 , CLA B:613 , CLA B:614 , SQD B:620 , LMT B:631 , BCR t:101
binding site for residue BCR B 617
035
AF8
SOFTWARE
LEU B:29 , GLY B:32 , TRP B:33 , SER B:36 , VAL B:102 , CLA B:607 , CLA B:613 , BCR t:101
binding site for residue BCR B 618
036
AF9
SOFTWARE
LEU B:109 , TRP B:113 , CLA B:606 , CLA B:616 , SQD a:412
binding site for residue BCR B 619
037
AG1
SOFTWARE
ARG B:18 , SER B:104 , PHE B:108 , TRP B:115 , BCR B:617 , ARG L:7 , ARG l:14 , TYR l:18 , LEU m:16 , LMT m:102 , PHE t:19 , PHE t:23 , BCR t:101
binding site for residue SQD B 620
038
AG2
SOFTWARE
LHG A:417 , TYR B:40 , THR B:327 , PRO B:329 , CLA B:607 , CLA B:614 , LMT B:631 , HOH B:790 , HOH B:792 , PHE L:35 , ASN M:4 , LEU M:6 , ALA M:10 , LEU M:13 , PHE M:14
binding site for residue LMG B 621
039
AG3
SOFTWARE
SER B:76 , TRP B:78 , GLU B:94 , LMT B:630 , HOH B:726 , TYR a:73 , GOL a:411 , GLY o:112 , GLY o:113
binding site for residue HTG B 622
040
AG4
SOFTWARE
LYS B:341 , SER B:419 , TYR B:420 , LYS B:423 , GLU B:431 , PHE B:432 , THR B:434 , HOH B:721 , HOH B:743 , GLN O:176 , ALA O:177 , LYS O:178 , GLU O:179 , HOH O:485
binding site for residue HTG B 623
041
AG5
SOFTWARE
TRP B:185 , CLA B:601
binding site for residue HTG B 624
042
AG6
SOFTWARE
ASP B:276 , ARG B:357 , PRO B:360 , HOH B:760 , GLU D:337
binding site for residue GOL B 625
043
AG7
SOFTWARE
PRO B:50 , PRO B:54 , MET B:55 , ILE B:80 , GLU B:266 , LYS B:308 , HOH B:793
binding site for residue GOL B 626
044
AG8
SOFTWARE
TRP B:75 , ASP B:87 , GLY B:89 , PHE B:90 , LEU a:102
binding site for residue HTG B 627
045
AG9
SOFTWARE
LMT B:630 , LMT B:631 , FME t:1 , BCR t:101 , HOH t:203
binding site for residue LMT B 629
046
AH1
SOFTWARE
ALA B:43 , HTG B:622 , LMT B:629 , HOH B:722 , HOH B:783 , HOH B:827 , LEU a:72 , TYR a:73 , ARG d:304
binding site for residue LMT B 630
047
AH2
SOFTWARE
TYR B:40 , BCR B:617 , LMG B:621 , LMT B:629 , LEU M:6 , ALA m:12 , ILE t:4 , PHE t:8
binding site for residue LMT B 631
048
AH3
SOFTWARE
PHE A:93 , TRP A:97 , GLU A:98 , LEU A:121 , CLA A:408 , LEU C:214 , SER C:216 , PHE C:218 , GLU C:221 , CLA C:506 , DGD C:517 , LYS I:5 , TYR I:9
binding site for residue LMG C 501
049
AH4
SOFTWARE
LEU C:95 , LEU C:168 , GLY C:171 , ALA C:172 , LEU C:175 , ILE C:224 , VAL C:233 , HIS C:237 , ILE C:240 , MET C:282 , PHE C:289 , TYR C:297 , CLA C:503 , CLA C:504 , CLA C:507 , CLA C:508 , BCR C:516 , HOH C:697
binding site for residue CLA C 502
050
AH5
SOFTWARE
TRP C:63 , HIS C:91 , LEU C:174 , PHE C:182 , LEU C:279 , MET C:282 , ALA C:286 , VAL C:290 , TYR C:297 , LEU C:426 , HIS C:430 , LEU C:433 , PHE C:437 , CLA C:502 , CLA C:504 , CLA C:505 , CLA C:511 , CLA C:513
binding site for residue CLA C 503
051
AH6
SOFTWARE
ILE C:60 , VAL C:61 , ALA C:64 , THR C:68 , LEU C:88 , HIS C:91 , LEU C:95 , VAL C:114 , HIS C:118 , CLA C:502 , CLA C:503 , CLA C:510 , CLA C:511 , CLA C:513 , CLA C:514 , LMG Z:101
binding site for residue CLA C 504
052
AH7
SOFTWARE
TRP C:63 , PHE C:70 , GLN C:84 , GLY C:85 , ILE C:87 , TRP C:425 , SER C:429 , HIS C:430 , PHE C:436 , CLA C:503 , CLA C:509 , CLA C:511 , DGD C:518 , DGD C:519 , LMG C:520 , HOH C:700 , HOH C:722 , LHG D:409 , PRO K:26
binding site for residue CLA C 505
053
AH8
SOFTWARE
GLY A:128 , TRP A:131 , CLA A:408 , PHE C:264 , TYR C:274 , GLY C:277 , HIS C:441 , LEU C:442 , ALA C:445 , ARG C:449 , LMG C:501 , CLA C:508 , BCR C:516 , HOH C:639
binding site for residue CLA C 506
054
AH9
SOFTWARE
CLA A:408 , LEU C:165 , LEU C:213 , ILE C:243 , GLY C:247 , TRP C:250 , HIS C:251 , THR C:254 , THR C:255 , PHE C:257 , TRP C:259 , PHE C:264 , CLA C:502 , CLA C:508 , BCR C:516 , DGD C:517 , LMT I:101
binding site for residue CLA C 507
055
AI1
SOFTWARE
MET C:157 , THR C:158 , LEU C:161 , HIS C:164 , LEU C:165 , LEU C:168 , PHE C:264 , TRP C:266 , TYR C:271 , TYR C:274 , SER C:275 , MET C:282 , CLA C:502 , CLA C:506 , CLA C:507 , CLA C:510 , HOH C:617
binding site for residue CLA C 508
056
AI2
SOFTWARE
TRP C:36 , ALA C:37 , GLY C:38 , ASN C:39 , LEU C:272 , LEU C:276 , PHE C:436 , PHE C:437 , GLY C:440 , TRP C:443 , HIS C:444 , ARG C:447 , CLA C:505 , CLA C:510 , CLA C:511 , CLA C:512 , DGD C:518 , LMG C:520 , LHG D:409
binding site for residue CLA C 509
057
AI3
SOFTWARE
ASN C:39 , LEU C:49 , ALA C:52 , HIS C:53 , HIS C:56 , TYR C:149 , GLY C:268 , GLU C:269 , TYR C:271 , LEU C:272 , SER C:275 , LEU C:276 , LEU C:279 , CLA C:504 , CLA C:508 , CLA C:509 , CLA C:511 , CLA C:512
binding site for residue CLA C 510
058
AI4
SOFTWARE
ASN C:39 , HIS C:56 , LEU C:59 , TRP C:63 , LEU C:279 , PHE C:436 , PHE C:437 , CLA C:503 , CLA C:504 , CLA C:505 , CLA C:509 , CLA C:510 , CLA C:512 , LHG D:409 , PRO K:29 , LEU K:33
binding site for residue CLA C 511
059
AI5
SOFTWARE
THR C:24 , ARG C:26 , TRP C:35 , GLY C:38 , ASN C:39 , ARG C:41 , LEU C:42 , LEU C:45 , LYS C:48 , ALA C:52 , PHE C:127 , CLA C:509 , CLA C:510 , CLA C:511 , HOH C:691 , PHE K:32 , LEU K:33 , TRP K:39 , GLN K:40 , BCR K:102 , ILE Y:36 , LEU Y:39 , LEU Y:46 , VAL Z:20
binding site for residue CLA C 512
060
AI6
SOFTWARE
HIS C:53 , ALA C:57 , LEU C:125 , PHE C:146 , PHE C:147 , PHE C:163 , HIS C:164 , VAL C:167 , GLY C:171 , CLA C:503 , CLA C:504 , CLA C:514 , BCR C:515
binding site for residue CLA C 513
061
AI7
SOFTWARE
LEU C:50 , VAL C:54 , VAL C:124 , GLY C:128 , TYR C:131 , HIS C:132 , PRO C:137 , TYR C:143 , PHE C:147 , CLA C:504 , CLA C:513 , BCR C:515 , LMG Z:101 , LMG Z:102
binding site for residue CLA C 514
062
AI8
SOFTWARE
PHE C:112 , ILE C:120 , SER C:121 , CLA C:513 , CLA C:514 , TYR K:15 , ASN Z:58
binding site for residue BCR C 515
063
AI9
SOFTWARE
ILE C:209 , LEU C:213 , ASP C:232 , GLY C:236 , HIS C:237 , ILE C:240 , PHE C:264 , CLA C:502 , CLA C:506 , CLA C:507 , PHE I:23 , LEU I:24
binding site for residue BCR C 516
064
AJ1
SOFTWARE
LEU A:91 , SER A:148 , ILE A:163 , CLA A:408 , PRO C:217 , GLY C:219 , GLY C:220 , GLU C:221 , GLY C:222 , TRP C:223 , VAL C:225 , SER C:226 , VAL C:227 , CYS C:288 , PHE C:292 , ASN C:293 , ASN C:294 , THR C:295 , ASP C:360 , PHE C:361 , ARG C:362 , LMG C:501 , CLA C:507 , HOH C:612 , HOH C:641 , HOH C:644 , HOH C:662 , HOH C:712
binding site for residue DGD C 517
065
AJ2
SOFTWARE
PHE A:197 , GLU C:83 , GLN C:84 , GLY C:85 , LEU C:404 , SER C:406 , ASN C:418 , PHE C:419 , VAL C:420 , TRP C:425 , THR C:428 , CLA C:505 , CLA C:509 , DGD C:519 , LMG C:520 , HOH C:628 , HOH C:666 , HOH C:668 , PHE J:28 , TYR J:32 , HOH J:202
binding site for residue DGD C 518
066
AJ3
SOFTWARE
GLN A:199 , LEU A:200 , PHE A:300 , ASN A:301 , PHE A:302 , SER A:305 , CLA A:406 , ASN C:405 , ASN C:415 , SER C:416 , ASN C:418 , CLA C:505 , DGD C:518 , HOH C:603 , HOH C:608 , LHG D:409 , ALA J:31 , TYR J:32 , GLY J:36 , SER J:37 , SER J:38 , LMG J:101
binding site for residue DGD C 519
067
AJ4
SOFTWARE
HIS C:74 , CLA C:505 , CLA C:509 , DGD C:518 , HOH C:637 , ILE J:21 , ASP K:23 , VAL K:30 , GLN Y:21
binding site for residue LMG C 520
068
AJ5
SOFTWARE
TRP C:97 , PHE C:182
binding site for residue HTG C 521
069
AJ6
SOFTWARE
ASN C:201 , PRO C:202
binding site for residue HTG C 522
070
AJ7
SOFTWARE
MET C:396 , THR C:397 , HIS C:398 , ALA C:399 , GLY C:409 , VAL C:410 , HOH C:606 , HOH C:616 , HOH C:643 , LYS V:47
binding site for residue GOL C 523
071
AJ8
SOFTWARE
ASN C:155 , THR C:158 , THR C:159 , HIS C:251 , ILE C:252 , THR C:254
binding site for residue CA C 524
072
AJ9
SOFTWARE
LEU A:41 , ALA A:44 , THR A:45 , PHE A:48 , TYR A:126 , GLN A:130 , TYR A:147 , GLY A:175 , CLA A:404 , CLA A:405 , LEU D:205 , ALA D:208 , LEU D:209 , ILE D:213 , TRP D:253 , PHE D:257
binding site for residue PHO D 401
073
AK1
SOFTWARE
LEU A:72 , TYR A:73 , ARG D:304 , ALA b:43 , HTG b:628
binding site for residue LMT D 402
074
AK2
SOFTWARE
ARG B:224 , LYS B:227 , LYS B:498 , ASP B:501 , HOH B:724 , HOH B:729 , ARG D:12 , ASP D:16 , ASP D:19 , ASP D:20 , HOH D:581 , ARG X:39
binding site for residue LMT D 403
075
AK3
SOFTWARE
MET A:183 , PHE A:206 , CLA A:404 , CLA A:406 , PHO A:407 , PL9 A:414 , PRO D:149 , VAL D:152 , VAL D:156 , PHE D:181 , LEU D:182 , PHE D:185 , GLN D:186 , TRP D:191 , THR D:192 , HIS D:197 , GLY D:200 , VAL D:204 , SER D:282 , ALA D:283 , VAL D:286
binding site for residue CLA D 404
076
AK4
SOFTWARE
CLA B:608 , PRO D:39 , CYS D:40 , LEU D:43 , LEU D:89 , LEU D:90 , LEU D:91 , LEU D:92 , TRP D:93 , THR D:112 , PHE D:113 , HIS D:117 , LEU H:39 , HOH H:202
binding site for residue CLA D 405
077
AK5
SOFTWARE
TYR D:42 , LEU D:43 , GLY D:46 , GLY D:47 , LEU D:49 , THR D:50 , PRO F:29 , THR F:30 , PHE F:33 , VAL J:20 , VAL J:24 , LMG J:101
binding site for residue BCR D 406
078
AK6
SOFTWARE
CLA A:405 , LHG A:417 , MET D:198 , ALA D:202 , HIS D:214 , THR D:217 , TRP D:253 , ALA D:260 , PHE D:261 , LEU D:267 , VAL D:274 , LHG D:408 , LEU L:29
binding site for residue PL9 D 407
079
AK7
SOFTWARE
LHG A:417 , PHE D:257 , ALA D:260 , PHE D:261 , SER D:262 , ASN D:263 , TRP D:266 , PHE D:270 , PL9 D:407 , HOH D:520 , ASN L:13 , THR L:15 , LEU L:19 , PHE T:17 , ALA T:20 , HOH T:203
binding site for residue LHG D 408
080
AK8
SOFTWARE
ARG A:140 , TRP A:142 , PHE A:273 , SQD A:410 , TRP C:36 , TRP C:443 , ARG C:447 , CLA C:505 , CLA C:509 , CLA C:511 , DGD C:519 , GLU D:219 , ASN D:220 , ALA D:229 , THR D:231 , PHE D:232 , HOH D:572
binding site for residue LHG D 409
081
AK9
SOFTWARE
GLY D:13 , TRP D:14 , PHE D:15 , TRP H:25 , PRO H:29
binding site for residue HTG D 412
082
AL1
SOFTWARE
PL9 A:414 , ARG D:24 , ARG D:26 , HOH E:203 , PHE F:16 , THR F:17 , VAL F:18 , LEU R:34 , THR X:24 , ASP X:35
binding site for residue SQD D 413
083
AL2
SOFTWARE
TYR A:262 , PL9 A:414 , PHE D:27 , THR E:4 , THR E:5 , GLU E:7 , ARG E:8 , PRO E:9 , PHE E:10 , SER E:11 , ARG F:19
binding site for residue LHG E 101
084
AL3
SOFTWARE
TRP E:35 , SER E:39 , HOH E:201 , PHE F:42 , ILE F:43 , GLN F:44
binding site for residue LMT E 102
085
AL4
SOFTWARE
PHE E:10 , ILE E:13 , ARG E:18 , TYR E:19 , HIS E:23 , THR E:26 , ILE E:27 , ILE F:15 , ARG F:19 , TRP F:20 , VAL F:23 , HIS F:24 , ALA F:27 , ILE F:31 , ALA R:19
binding site for residue HEM E 103
086
AL5
SOFTWARE
CLA B:601 , CLA B:609 , PHE H:38 , ILE X:3
binding site for residue BCR H 101
087
AL6
SOFTWARE
TYR B:193 , TYR B:258 , TYR B:273 , GLN B:274 , SER B:277 , CLA B:602 , CLA B:608 , HOH B:716 , HIS D:87 , ILE D:159 , LEU D:162 , HOH D:509 , TYR H:49 , ASN H:50 , VAL H:60 , SER H:61 , TRP H:62 , HOH H:205
binding site for residue DGD H 102
088
AL7
SOFTWARE
TRP A:14 , GLU A:15 , TRP C:259 , ARG C:262 , CLA C:507 , LEU I:24 , SER I:25 , GLY I:26 , ARG I:30 , HOH I:202
binding site for residue LMT I 101
089
AL8
SOFTWARE
DGD C:519 , HOH C:608 , TYR D:67 , GLY D:70 , CYS D:71 , ASN D:72 , PHE D:73 , BCR D:406 , THR F:30 , ILE F:37 , MET F:40 , GLN F:41 , PHE J:27 , GLY J:30 , ALA J:31 , LEU J:35 , MG J:103
binding site for residue LMG J 101
090
AL9
SOFTWARE
HOH F:103 , GLY J:30 , ALA J:33 , GLY J:34 , LEU J:35 , LMG J:101
binding site for residue MG J 103
091
AM1
SOFTWARE
GLY C:58 , LEU C:59 , SER C:122 , CLA C:512 , TYR K:15 , PHE K:32 , BCR Y:101 , SER Z:16
binding site for residue BCR K 102
092
AM2
SOFTWARE
ARG L:14 , TYR L:18 , HOH L:203 , HOH L:206 , HOH L:208 , LEU M:16 , TYR M:26 , CYS T:12 , PHE T:19 , PHE T:23 , BCR T:101 , ARG b:18 , LEU b:29 , SER b:104 , TRP b:115 , ARG l:7 , HOH l:202
binding site for residue SQD L 101
093
AM3
SOFTWARE
VAL M:27 , GLU M:30 , SER M:31 , GLN M:32 , GLN M:33 , CLA b:614 , HOH b:782 , ARG l:7 , PRO l:9 , VAL l:10 , ILE m:24 , GLN m:28 , GLN m:32
binding site for residue LMT M 101
094
AM4
SOFTWARE
FME M:1 , GLU M:2 , GLN M:5 , HOH M:206 , HOH M:207 , HOH M:209 , PHE T:8 , LMT b:627 , LEU m:6
binding site for residue LMT M 103
095
AM5
SOFTWARE
THR O:138 , SER O:139 , THR O:140 , ASN O:200 , VAL O:201 , HOH O:420
binding site for residue CA O 301
096
AM6
SOFTWARE
SQD A:412 , SQD L:101 , PHE T:18 , TRP b:33 , BCR b:618 , LMT b:627
binding site for residue BCR T 101
097
AM7
SOFTWARE
ALA A:309 , ARG F:45 , HOH F:101 , HOH F:102 , GLU V:23
binding site for residue CA V 201
098
AM8
SOFTWARE
ALA V:36 , CYS V:37 , CYS V:40 , HIS V:41 , THR V:46 , THR V:48 , LEU V:52 , ASP V:53 , LEU V:54 , THR V:58 , LEU V:72 , TYR V:75 , TYR V:82 , ILE V:88 , HIS V:92 , ILE V:119 , HOH V:315 , HOH V:323 , HOH V:328 , HOH V:335 , HOH V:351
binding site for residue HEM V 202
099
AM9
SOFTWARE
ALA V:89 , ARG V:96 , ASP V:99 , ILE V:100
binding site for residue HTG V 203
100
AN1
SOFTWARE
PHE C:62 , THR J:14 , ILE K:28 , LEU K:31 , ALA K:34 , VAL K:38 , BCR K:102 , ILE Y:28 , GLY Y:29 , GLY Y:32 , PHE Z:17
binding site for residue BCR Y 101
101
AN2
SOFTWARE
ASP C:107 , PHE C:109 , VAL C:117 , HIS C:118 , SER C:121 , CLA C:504 , CLA C:514 , VAL Z:62
binding site for residue LMG Z 101
102
AN3
SOFTWARE
PHE C:127 , TYR C:131 , ARG C:135 , CLA C:514 , TYR Z:27 , TRP Z:33 , LYS Z:37 , PHE Z:41
binding site for residue LMG Z 102
103
AO5
SOFTWARE
HTG B:622 , ASP a:103 , HOH a:572 , HOH a:579
binding site for residue GOL a 411
104
AO6
SOFTWARE
TRP B:113 , TYR B:117 , CLA B:606 , BCR B:619 , TRP a:20 , ASN a:26 , ARG a:27 , LEU a:28 , PHE t:22 , BCR t:101
binding site for residue SQD a 412
105
AQ7
SOFTWARE
LMT M:101 , VAL b:8 , HIS b:9 , VAL b:11 , LEU b:29 , TRP b:115 , CLA b:611 , CLA b:612 , CLA b:613 , BCR b:617 , LMG b:620 , HOH b:782 , GLN l:8 , VAL l:10 , PHE m:21 , LEU m:25
binding site for residue CLA b 614
106
AR2
SOFTWARE
BCR T:101 , LEU b:29 , GLY b:32 , TRP b:33 , SER b:36 , SER b:104 , GLY b:105 , CLA b:607
binding site for residue BCR b 618
107
AR3
SOFTWARE
SQD A:412 , LEU b:109 , CLA b:606 , CLA b:615 , CLA b:616
binding site for residue BCR b 619
108
AR4
SOFTWARE
HOH M:206 , TYR b:40 , THR b:327 , PRO b:329 , LYS b:332 , CLA b:607 , CLA b:614 , BCR b:617 , HOH b:701 , HOH b:837 , LHG d:407 , PHE l:35 , LHG l:101 , ASN m:4 , LEU m:6
binding site for residue LMG b 620
109
AR9
SOFTWARE
GOL A:411 , TRP b:75 , ASP b:87 , GLY b:89 , PHE b:90 , HOH b:826
binding site for residue HTG b 625
110
AS1
SOFTWARE
LMT M:103 , ILE T:4 , BCR T:101 , HOH T:201 , HOH b:831
binding site for residue LMT b 627
111
AS2
SOFTWARE
GOL A:411 , LMT D:402 , GLY O:112 , SER b:76 , TRP b:78 , GLU b:94 , LEU b:98 , HOH b:725
binding site for residue HTG b 628
112
AW4
SOFTWARE
GLU U:69 , PL9 a:414 , ARG d:26 , GLU e:7 , ILE f:15 , PHE f:16 , THR f:17 , VAL f:18 , VAL f:21 , THR x:24 , VAL x:27 , ILE x:31 , ASP x:35
binding site for residue SQD f 101
113
AX2
SOFTWARE
CLA B:614 , SQD B:620 , PRO L:9 , VAL L:10 , ILE M:24 , GLN M:28 , GLN M:32 , GLU m:30 , SER m:31 , GLN m:32 , GLN m:33 , LYS m:34 , HOH m:206
binding site for residue LMT m 102
114
AX4
SOFTWARE
TRP B:33 , MET B:37 , BCR B:617 , BCR B:618 , SQD B:620 , LMT B:629 , SQD a:412 , PHE t:18
binding site for residue BCR t 101
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain O
Chain R
Chain T
Chain U
Chain V
Chain X
Chain Y
Chain Z
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (2.2 MB)
Header - Asym.Unit
Biol.Unit 1 (1.1 MB)
Header - Biol.Unit 1
Biol.Unit 2 (1.1 MB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5GTH
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help