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5GQV
Asym. Unit
Info
Asym.Unit (150 KB)
Biol.Unit 1 (141 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BRANCHING ENZYME FROM CYANOTHECE SP. ATCC 51142 IN COMPLEX WITH MALTOHEXAOSE
Authors
:
R. Suzuki, E. Suzuki
Date
:
08 Aug 16 (Deposition) - 22 Feb 17 (Release) - 12 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Branching Enzyme, Glycoside Hydrolase Family 13, Cyanobacteria, Starch, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hayashi, R. Suzuki, C. Colleoni, S. G. Ball, N. Fujita, E. Suzuki
Bound Substrate In The Structure Of Cyanobacterial Branchin Enzyme Supports A New Mechanistic Model
J. Biol. Chem. V. 292 5465 2017
(for further references see the
PDB file header
)
[
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]
Hetero Components
(3, 40)
Info
All Hetero Components
1a: ALPHA-D-GLUCOSE (GLCa)
1aa: ALPHA-D-GLUCOSE (GLCaa)
1ab: ALPHA-D-GLUCOSE (GLCab)
1ac: ALPHA-D-GLUCOSE (GLCac)
1ad: ALPHA-D-GLUCOSE (GLCad)
1ae: ALPHA-D-GLUCOSE (GLCae)
1af: ALPHA-D-GLUCOSE (GLCaf)
1ag: ALPHA-D-GLUCOSE (GLCag)
1ah: ALPHA-D-GLUCOSE (GLCah)
1ai: ALPHA-D-GLUCOSE (GLCai)
1aj: ALPHA-D-GLUCOSE (GLCaj)
1ak: ALPHA-D-GLUCOSE (GLCak)
1b: ALPHA-D-GLUCOSE (GLCb)
1c: ALPHA-D-GLUCOSE (GLCc)
1d: ALPHA-D-GLUCOSE (GLCd)
1e: ALPHA-D-GLUCOSE (GLCe)
1f: ALPHA-D-GLUCOSE (GLCf)
1g: ALPHA-D-GLUCOSE (GLCg)
1h: ALPHA-D-GLUCOSE (GLCh)
1i: ALPHA-D-GLUCOSE (GLCi)
1j: ALPHA-D-GLUCOSE (GLCj)
1k: ALPHA-D-GLUCOSE (GLCk)
1l: ALPHA-D-GLUCOSE (GLCl)
1m: ALPHA-D-GLUCOSE (GLCm)
1n: ALPHA-D-GLUCOSE (GLCn)
1o: ALPHA-D-GLUCOSE (GLCo)
1p: ALPHA-D-GLUCOSE (GLCp)
1q: ALPHA-D-GLUCOSE (GLCq)
1r: ALPHA-D-GLUCOSE (GLCr)
1s: ALPHA-D-GLUCOSE (GLCs)
1t: ALPHA-D-GLUCOSE (GLCt)
1u: ALPHA-D-GLUCOSE (GLCu)
1v: ALPHA-D-GLUCOSE (GLCv)
1w: ALPHA-D-GLUCOSE (GLCw)
1x: ALPHA-D-GLUCOSE (GLCx)
1y: ALPHA-D-GLUCOSE (GLCy)
1z: ALPHA-D-GLUCOSE (GLCz)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLC
37
Ligand/Ion
ALPHA-D-GLUCOSE
2
GOL
2
Ligand/Ion
GLYCEROL
3
MG
1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:576 , ARG A:580 , PRO A:622 , GLN A:625 , TYR A:714 , GLY A:715
binding site for residue GOL A 838
02
AC2
SOFTWARE
HIS A:19 , GLU A:23 , HIS A:516 , LEU A:519 , ASP A:520 , GLU A:556 , LYS A:561 , LYS A:567
binding site for residue GOL A 839
03
AC3
SOFTWARE
ASP A:612 , HOH A:940 , HOH A:946 , HOH A:958 , HOH A:989 , HOH A:996
binding site for residue MG A 840
04
AC4
SOFTWARE
ASP A:8 , ARG A:216 , PRO A:217 , VAL A:282 , GLU A:284 , PRO A:322 , PHE A:323 , ASP A:324 , SER A:326 , TRP A:327 , GLN A:330 , ASP A:373 , TRP A:399 , GLY A:400 , TRP A:610
binding site for Poly-Saccharide residues GLC A 801 through GLC A 806
05
AC5
SOFTWARE
ASP A:8 , TRP A:147 , ASN A:150 , TYR A:175 , ARG A:216 , PRO A:217 , VAL A:282 , GLU A:284 , PRO A:322 , PHE A:323 , ASP A:324 , GLN A:330 , ASP A:373 , TRP A:399 , GLY A:400 , GLY A:407 , ARG A:408 , HIS A:409 , GLU A:410 , TRP A:610 , GLC A:801
binding site for Poly-Saccharide residues GLC A 807 through GLC A 810
06
AC6
SOFTWARE
TRP A:147 , ASN A:150 , TRP A:163 , TYR A:175 , LYS A:192 , GLU A:204 , GLU A:214 , ARG A:408 , GLU A:410 , GLC A:807
binding site for Poly-Saccharide residues GLC A 811 through GLC A 813
07
AC7
SOFTWARE
ARG A:59 , TRP A:163 , GLU A:214 , LEU A:247 , PHE A:476 , SER A:496 , ARG A:497 , PRO A:498 , VAL A:499 , TYR A:500 , ASP A:501 , GLY A:505 , PHE A:506 , ASN A:547 , GLC A:811
binding site for Poly-Saccharide residues GLC A 814 through GLC A 820
08
AC8
SOFTWARE
ARG A:59 , LEU A:247 , PHE A:476 , SER A:496 , ARG A:497 , PRO A:498 , VAL A:499 , TYR A:500 , ASP A:501 , GLY A:505 , PHE A:506 , ASN A:547 , ASP A:657 , HIS A:663 , HIS A:692 , TYR A:693 , ARG A:694 , PHE A:732 , HIS A:733 , GLC A:814
binding site for Poly-Saccharide residues GLC A 821 through GLC A 824
09
AC9
SOFTWARE
ASP A:657 , HIS A:663 , HIS A:692 , TYR A:693 , ARG A:694 , GLU A:705 , PHE A:707 , ASN A:708 , ALA A:711 , GLN A:713 , TYR A:714 , ASN A:718 , GLY A:720 , ASN A:721 , LEU A:722 , GLY A:723 , LYS A:725 , PHE A:732 , HIS A:733 , GLC A:821
binding site for Poly-Saccharide residues GLC A 825 through GLC A 830
10
AD1
SOFTWARE
ASP A:571 , TRP A:573 , GLN A:574 , PRO A:687 , PRO A:689 , GLU A:705 , PHE A:707 , ASN A:708 , ALA A:711 , GLN A:713 , TYR A:714 , SER A:717 , ASN A:718 , MET A:719 , GLY A:720 , ASN A:721 , LEU A:722 , GLY A:723 , GLC A:825
binding site for Poly-Saccharide residues GLC A 831 through GLC A 834
11
AD2
SOFTWARE
ASN A:137 , GLY A:138 , THR A:537 , PHE A:538 , MET A:540 , ASP A:571 , TRP A:573 , GLN A:574 , TRP A:655 , CYS A:658 , PRO A:687 , PRO A:689 , SER A:717 , MET A:719 , GLC A:831
binding site for Poly-Saccharide residues GLC A 835 through GLC A 837
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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Asym.Unit (150 KB)
Header - Asym.Unit
Biol.Unit 1 (141 KB)
Header - Biol.Unit 1
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