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5GP1
Asym. Unit
Info
Asym.Unit (272 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (88 KB)
Biol.Unit 3 (90 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ZIKV NS5 METHYLTRANSFERASE IN COMPLEX WITH GTP AND SAH
Authors
:
C. Zhang, T. Jin
Date
:
30 Jul 16 (Deposition) - 07 Dec 16 (Release) - 07 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.44
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Methyltransferase Gtp Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Zhang, T. Feng, J. Cheng, Y. Li, X. Yin, W. Zeng, X. Jin, Y. Li, F. Guo, T. Jin
Structure Of The Ns5 Methyltransferase From Zika Virus And Implications In Inhibitor Design
Biochem. Biophys. Res. Commun. 2016
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: P1-7-METHYLGUANOSINE-P3-ADENOSINE-... (GTAa)
1b: P1-7-METHYLGUANOSINE-P3-ADENOSINE-... (GTAb)
1c: P1-7-METHYLGUANOSINE-P3-ADENOSINE-... (GTAc)
2a: NICKEL (II) ION (NIa)
3a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
3b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
3c: S-ADENOSYL-L-HOMOCYSTEINE (SAHc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GTA
3
Ligand/Ion
P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE
2
NI
1
Ligand/Ion
NICKEL (II) ION
3
SAH
3
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
4
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:29 , GLU A:34 , ARG A:57 , ARG A:213
binding site for residue SO4 A 301
02
AC2
SOFTWARE
ARG A:37 , ARG A:41 , LEU A:44 , VAL A:55 , ARG A:57 , ARG A:84 , SO4 A:305
binding site for residue SO4 A 302
03
AC3
SOFTWARE
GLU A:155 , GLU A:158 , LEU A:206 , SER A:227 , SER A:232
binding site for residue SO4 A 303
04
AC4
SOFTWARE
ARG A:160 , LYS A:252
binding site for residue SO4 A 304
05
AC5
SOFTWARE
ARG A:84 , GLU A:111 , SO4 A:302
binding site for residue SO4 A 305
06
AC6
SOFTWARE
LYS A:13 , LEU A:16 , ASN A:17 , MET A:19 , PHE A:24 , LYS A:28 , SER A:151 , SER A:152 , SER A:215 , HOH A:413 , HOH A:418
binding site for residue GTA A 306
07
AC7
SOFTWARE
SER A:56 , GLY A:58 , ASP A:79 , GLY A:81 , CYS A:82 , GLY A:83 , GLY A:86 , TRP A:87 , THR A:104 , HIS A:110 , VAL A:130 , ASP A:131 , VAL A:132 , PHE A:133 , ASP A:146 , ILE A:147
binding site for residue SAH A 307
08
AC8
SOFTWARE
ARG B:37 , ARG B:41 , ARG B:57 , ARG B:84
binding site for residue SO4 B 301
09
AC9
SOFTWARE
LYS B:29 , ARG B:41 , ARG B:213
binding site for residue SO4 B 302
10
AD1
SOFTWARE
LYS B:13 , LEU B:16 , ASN B:17 , MET B:19 , PHE B:24 , LYS B:28 , SER B:150 , SER B:151 , SER B:152 , SER B:215 , THR B:216
binding site for residue GTA B 303
11
AD2
SOFTWARE
SER B:56 , GLY B:58 , GLY B:81 , CYS B:82 , GLY B:83 , ARG B:84 , GLY B:85 , GLY B:86 , TRP B:87 , THR B:104 , LYS B:105 , HIS B:110 , GLU B:111 , VAL B:130 , ASP B:131 , VAL B:132 , PHE B:133 , ASP B:146
binding site for residue SAH B 304
12
AD3
SOFTWARE
ARG C:37 , ARG C:57 , ARG C:84
binding site for residue SO4 C 301
13
AD4
SOFTWARE
HIS C:110 , GLU C:111
binding site for residue NI C 302
14
AD5
SOFTWARE
LYS C:13 , LEU C:16 , ASN C:17 , MET C:19 , PHE C:24 , LYS C:28 , SER C:150 , SER C:151 , SER C:152 , SER C:215 , THR C:216
binding site for residue GTA C 303
15
AD6
SOFTWARE
SER C:56 , GLY C:58 , GLY C:81 , CYS C:82 , GLY C:83 , GLY C:85 , GLY C:86 , THR C:104 , LYS C:105 , HIS C:110 , GLU C:111 , VAL C:130 , ASP C:131 , VAL C:132 , PHE C:133 , ASP C:146 , ILE C:147
binding site for residue SAH C 304
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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Pfam Domains
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Asym.Unit (272 KB)
Header - Asym.Unit
Biol.Unit 1 (91 KB)
Header - Biol.Unit 1
Biol.Unit 2 (88 KB)
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Biol.Unit 3 (90 KB)
Header - Biol.Unit 3
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