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5GMZ
Asym. Unit
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Asym.Unit (331 KB)
Biol.Unit 1 (315 KB)
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(1)
Title
:
HEPATITIS B VIRUS CORE PROTEIN Y132A MUTANT IN COMPLEX WITH 4-METHYL HETEROARYLDIHYDROPYRIMIDINE
Authors
:
Z. H. Xu, Z. Zhou
Date
:
18 Jul 16 (Deposition) - 10 Aug 16 (Release) - 07 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Hbv, Capid Assembly, Hap, Core Protein, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Qiu, X. Lin, M. Zhou, Y. Liu, W. Zhu, W. Chen, W. Zhang, L. Guo, H. Liu, G. Wu, M. Huang, M. Jiang, Z. Xu, Z. Zhou, N. Qin, S. Ren, H. Qiu, S. Zhong, Y. Zhang, Y. Zhang, X. Wu, L. Shi, F. Shen, Y. Mao, X. Zhou, W. Yang, J. Z. Wu, G. Yang, A. V. Mayweg, H. C. Shen, G. Tang
Design And Synthesis Of Orally Bioavailable 4-Methyl Heteroaryldihydropyrimidine Based Hepatitis B Virus (Hbv) Capsid Inhibitors
J. Med. Chem. V. 59 7651 2016
[
close entry info
]
Hetero Components
(4, 21)
Info
All Hetero Components
1a: (2S)-4,4-DIFLUORO-1-[[(4S)-4-(4-FL... (6XUa)
1b: (2S)-4,4-DIFLUORO-1-[[(4S)-4-(4-FL... (6XUb)
1c: (2S)-4,4-DIFLUORO-1-[[(4S)-4-(4-FL... (6XUc)
1d: (2S)-4,4-DIFLUORO-1-[[(4S)-4-(4-FL... (6XUd)
1e: (2S)-4,4-DIFLUORO-1-[[(4S)-4-(4-FL... (6XUe)
1f: (2S)-4,4-DIFLUORO-1-[[(4S)-4-(4-FL... (6XUf)
1g: (2S)-4,4-DIFLUORO-1-[[(4S)-4-(4-FL... (6XUg)
2a: CHLORIDE ION (CLa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: ISOPROPYL ALCOHOL (IPAa)
4b: ISOPROPYL ALCOHOL (IPAb)
4c: ISOPROPYL ALCOHOL (IPAc)
4d: ISOPROPYL ALCOHOL (IPAd)
4e: ISOPROPYL ALCOHOL (IPAe)
4f: ISOPROPYL ALCOHOL (IPAf)
4g: ISOPROPYL ALCOHOL (IPAg)
4h: ISOPROPYL ALCOHOL (IPAh)
4i: ISOPROPYL ALCOHOL (IPAi)
4j: ISOPROPYL ALCOHOL (IPAj)
4k: ISOPROPYL ALCOHOL (IPAk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6XU
7
Ligand/Ion
(2S)-4,4-DIFLUORO-1-[[(4S)-4-(4-FLUOROPHENYL)-5-METHOXYCARBONYL-4-METHYL-2-(1,3-THIAZOL-2-YL)-1H-PYRIMIDIN-6-YL]METHYL]PYRROLIDINE-2-CARBOXYLIC ACID
2
CL
1
Ligand/Ion
CHLORIDE ION
3
GOL
2
Ligand/Ion
GLYCEROL
4
IPA
11
Ligand/Ion
ISOPROPYL ALCOHOL
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:96 , LEU A:100 , GLN B:57 , LEU B:60 , ASP B:64
binding site for residue IPA A 201
02
AC2
SOFTWARE
GLN A:57 , LEU A:60 , CYS A:61 , ASP A:64 , LYS B:96 , LEU B:100
binding site for residue IPA A 202
03
AC3
SOFTWARE
ALA A:131 , ARG A:133 , TRP F:125 , PRO F:135 , ASN F:136 , ALA F:137
binding site for residue IPA A 203
04
AC4
SOFTWARE
ARG A:39 , ASP A:40 , HOH A:316
binding site for residue IPA A 204
05
AC5
SOFTWARE
PHE A:23 , PRO A:25 , ASP A:29 , LEU A:30 , THR A:33 , LEU A:37 , TRP A:102 , SER A:106 , PHE A:110 , TYR A:118 , ILE A:139 , LEU A:140 , SER A:141 , HOH A:338 , HOH A:348 , HOH A:363 , VAL D:124 , TRP D:125 , ARG D:127 , THR D:128 , ALA D:132 , ARG D:133 , PRO D:134
binding site for residue 6XU A 205
06
AC6
SOFTWARE
TRP A:71 , THR A:74 , ASN A:75 , HOH A:321 , LEU B:76 , ALA B:80 , SER B:81 , LEU B:84 , VAL B:85 , CYS C:107 , LEU C:108 , GLY C:111
binding site for residue 6XU A 206
07
AC7
SOFTWARE
PRO B:135 , ASN B:136 , ALA B:137 , HOH B:334 , ALA C:131 , ARG C:133
binding site for residue GOL B 201
08
AC8
SOFTWARE
PHE B:23 , PRO B:25 , ASP B:29 , LEU B:30 , THR B:33 , LEU B:37 , TRP B:102 , SER B:106 , THR B:109 , PHE B:110 , TYR B:118 , ILE B:139 , LEU B:140 , SER B:141 , HOH B:332 , HOH B:371 , VAL C:124 , TRP C:125 , ARG C:127 , THR C:128 , ALA C:132 , ARG C:133 , PRO C:134
binding site for residue 6XU B 202
09
AC9
SOFTWARE
GLN C:57 , LEU C:60 , ASP C:64 , LYS D:96 , LEU D:100
binding site for residue IPA C 201
10
AD1
SOFTWARE
PHE C:23 , PRO C:25 , ASP C:29 , LEU C:30 , THR C:33 , LEU C:37 , TRP C:102 , SER C:106 , THR C:109 , PHE C:110 , TYR C:118 , ILE C:139 , LEU C:140 , SER C:141 , HOH C:352 , HOH C:353 , HOH C:357 , VAL F:124 , TRP F:125 , ARG F:127 , THR F:128 , ALA F:132 , ARG F:133 , PRO F:134
binding site for residue 6XU C 202
11
AD2
SOFTWARE
LYS C:96 , LEU C:100 , GLN D:57 , LEU D:60 , CYS D:61 , ASP D:64
binding site for residue IPA D 201
12
AD3
SOFTWARE
ASP D:29 , ARG E:127
binding site for residue IPA D 202
13
AD4
SOFTWARE
HOH D:316 , HOH D:365
binding site for residue CL D 203
14
AD5
SOFTWARE
PHE D:23 , PRO D:25 , ASP D:29 , LEU D:30 , THR D:33 , LEU D:37 , TRP D:102 , SER D:106 , PHE D:110 , TYR D:118 , ILE D:139 , LEU D:140 , SER D:141 , HOH D:313 , HOH D:367 , HOH D:383 , VAL E:124 , TRP E:125 , ARG E:127 , THR E:128 , ALA E:132 , ARG E:133 , PRO E:134
binding site for residue 6XU D 204
15
AD6
SOFTWARE
LEU E:37 , TYR E:38 , ARG E:39 , ASP E:40
binding site for residue IPA E 201
16
AD7
SOFTWARE
GLN E:57 , LEU E:60 , ASP E:64 , LYS F:96 , LEU F:100
binding site for residue IPA E 202
17
AD8
SOFTWARE
TRP D:125 , PRO D:135 , ASN D:136 , ALA D:137 , ALA E:131 , ARG E:133
binding site for residue IPA E 203
18
AD9
SOFTWARE
ALA B:131 , ARG B:133 , TRP E:125 , PRO E:135 , ASN E:136 , ALA E:137
binding site for residue IPA E 204
19
AE1
SOFTWARE
VAL B:124 , TRP B:125 , ARG B:127 , THR B:128 , ALA B:132 , ARG B:133 , PRO B:134 , PHE E:23 , PRO E:25 , ASP E:29 , LEU E:30 , THR E:33 , LEU E:37 , TRP E:102 , SER E:106 , THR E:109 , PHE E:110 , TYR E:118 , ILE E:139 , LEU E:140 , SER E:141 , HOH E:326 , HOH E:333 , HOH E:348
binding site for residue 6XU E 205
20
AE2
SOFTWARE
PRO C:135 , ASN C:136 , ALA C:137 , PRO F:130 , ALA F:131 , ARG F:133 , HOH F:334
binding site for residue GOL F 201
21
AE3
SOFTWARE
VAL A:124 , TRP A:125 , ARG A:127 , THR A:128 , ALA A:132 , ARG A:133 , PRO A:134 , PHE F:23 , PRO F:25 , ASP F:29 , LEU F:30 , THR F:33 , LEU F:37 , TRP F:102 , SER F:106 , THR F:109 , PHE F:110 , TYR F:118 , ILE F:139 , LEU F:140 , SER F:141 , HOH F:319 , HOH F:343
binding site for residue 6XU F 202
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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