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5GMG
Asym. Unit
Info
Asym.Unit (266 KB)
Biol.Unit 1 (258 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MONKEY TLR7 IN COMPLEX WITH LOXORIBINE AND POLYU
Authors
:
Z. Zhang, U. Ohto, T. Shimizu
Date
:
14 Jul 16 (Deposition) - 02 Nov 16 (Release) - 02 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Immune System, Tlr7, Innate Immunity, Ssrna Recogniton, Immune System-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhang, U. Ohto, T. Shibata, E. Krayukhina, M. Taoka, Y. Yamauchi, H. Tanji, T. Isobe, S. Uchiyama, K. Miyake, T. Shimizu
Structural Analysis Reveals That Toll-Like Receptor 7 Is A Dual Receptor For Guanosine And Single-Stranded Rna
Immunity V. 45 737 2016
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2a: PHOSPHATE ION (PO4a)
3a: 2-AZANYL-9-[(2~{R},3~{R},4~{S},5~{... (SDLa)
3b: 2-AZANYL-9-[(2~{R},3~{R},4~{S},5~{... (SDLb)
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No.
Name
Count
Type
Full Name
1
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
PO4
1
Ligand/Ion
PHOSPHATE ION
3
SDL
2
Ligand/Ion
2-AZANYL-9-[(2~{R},3~{R},4~{S},5~{R})-5-(HYDROXYMETHYL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]-7-PROP-2-ENYL-1~{H}-PURINE-6,8-DIONE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:532 , ASP A:555 , LEU A:557 , GLY A:584 , ILE A:585 , THR A:586 , PHE B:351 , GLN B:354 , TYR B:356 , VAL B:381 , PHE B:408 , LYS B:432
binding site for residue SDL B 901
02
AC2
SOFTWARE
PHE A:351 , GLN A:354 , TYR A:356 , VAL A:381 , PHE A:408 , LYS A:432 , THR B:532 , ASP B:555 , LEU B:557 , GLY B:584 , ILE B:585 , THR B:586
binding site for residue SDL B 902
03
AC3
SOFTWARE
ARG B:696 , ASN B:720
binding site for residue PO4 B 908
04
AC4
SOFTWARE
ASN A:69 , VAL A:92 , GLU A:93 , SER A:131
binding site for Mono-Saccharide NAG A 901 bound to ASN A 69
05
AC5
SOFTWARE
CYS A:183 , TYR A:184 , PRO A:188 , CYS A:189 , TYR A:190 , VAL A:191 , SER A:192 , ASN A:215
binding site for Poly-Saccharide residues NAG A 902 through NAG A 903 bound to ASN A 215
06
AC6
SOFTWARE
SER A:490 , CYS A:491 , SER A:501 , LYS A:502 , ASN A:523 , TYR A:546 , ASP A:548
binding site for Mono-Saccharide NAG A 905 bound to ASN A 523
07
AC7
SOFTWARE
GLU A:654 , ASP A:656 , ASN A:679 , HOH A:1009
binding site for Mono-Saccharide NAG A 904 bound to ASN A 679
08
AC8
SOFTWARE
ASN B:69 , GLU B:93 , SER B:131
binding site for Mono-Saccharide NAG B 907 bound to ASN B 69
09
AC9
SOFTWARE
CYS B:183 , TYR B:184 , PRO B:188 , CYS B:189 , TYR B:190 , VAL B:191 , SER B:192 , ASN B:215
binding site for Poly-Saccharide residues NAG B 904 through NAG B 905 bound to ASN B 215
10
AD1
SOFTWARE
SER B:490 , CYS B:491 , SER B:501 , LYS B:502 , ASN B:523 , TYR B:546 , ASP B:548
binding site for Mono-Saccharide NAG B 906 bound to ASN B 523
11
AD2
SOFTWARE
SER B:559 , ASN B:590 , THR B:612 , SER B:613
binding site for Mono-Saccharide NAG B 903 bound to ASN B 590
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (266 KB)
Header - Asym.Unit
Biol.Unit 1 (258 KB)
Header - Biol.Unit 1
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