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5GMF
Asym. Unit
Info
Asym.Unit (537 KB)
Biol.Unit 1 (268 KB)
Biol.Unit 2 (267 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MONKEY TLR7 IN COMPLEX WITH GUANOSINE AND POLYU
Authors
:
Z. Zhang, U. Ohto, T. Shimizu
Date
:
14 Jul 16 (Deposition) - 02 Nov 16 (Release) - 02 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,C,G,H (1x)
Biol. Unit 2: B,D,E,F (1x)
Keywords
:
Immune System, Tlr7, Innate Immunity, Ssrna Recogniton, Immune System-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhang, U. Ohto, T. Shibata, E. Krayukhina, M. Taoka, Y. Yamauchi, H. Tanji, T. Isobe, S. Uchiyama, K. Miyake, T. Shimizu
Structural Analysis Reveals That Toll-Like Receptor 7 Is A Dual Receptor For Guanosine And Single-Stranded Rna
Immunity V. 45 737 2016
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Hetero Components
(3, 38)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: GUANOSINE (GMPa)
2b: GUANOSINE (GMPb)
2c: GUANOSINE (GMPc)
2d: GUANOSINE (GMPd)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
GMP
4
Ligand/Ion
GUANOSINE
3
NAG
30
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:829 , TRP B:29
binding site for residue CA A 901
02
AC2
SOFTWARE
THR B:532 , ASP B:555 , LEU B:557 , GLY B:584 , ILE B:585 , THR B:586 , PHE D:351 , TYR D:356 , PHE D:408 , LYS D:432
binding site for residue GMP B 901
03
AC3
SOFTWARE
TRP A:29 , ASP B:829
binding site for residue CA B 902
04
AC4
SOFTWARE
THR A:532 , ASP A:555 , LEU A:557 , GLY A:584 , ILE A:585 , THR A:586 , PHE C:351 , TYR C:356 , PHE C:408 , LYS C:432
binding site for residue GMP C 901
05
AC5
SOFTWARE
PHE A:351 , TYR A:356 , VAL A:381 , PHE A:408 , LYS A:432 , THR C:532 , ASP C:555 , LEU C:557 , GLY C:584 , ILE C:585 , THR C:586
binding site for residue GMP C 902
06
AC6
SOFTWARE
TYR B:356 , PHE B:408 , LYS B:432 , THR D:532 , ASP D:555 , LEU D:557 , GLY D:584 , ILE D:585 , THR D:586
binding site for residue GMP D 901
07
AC7
SOFTWARE
TRP C:29 , ASP D:829
binding site for residue CA D 902
08
AC8
SOFTWARE
ASP C:829 , TRP D:29
binding site for residue CA D 903
09
AC9
SOFTWARE
LYS A:44 , ASN A:69 , VAL A:92 , GLU A:93 , SER A:131
binding site for Poly-Saccharide residues NAG A 903 through NAG A 904 bound to ASN A 69
10
AD1
SOFTWARE
CYS A:183 , TYR A:184 , PRO A:188 , CYS A:189 , TYR A:190 , VAL A:191 , SER A:192 , ASN A:215
binding site for Poly-Saccharide residues NAG A 905 through NAG A 906 bound to ASN A 215
11
AD2
SOFTWARE
LYS A:328 , ARG A:357 , ASN A:361 , GLY B:331 , ASP B:332 , LYS B:334 , SER B:363 , GLN B:364
binding site for Mono-Saccharide NAG A 907 bound to ASN A 361
12
AD3
SOFTWARE
ASN A:413 , SER A:415 , LYS A:418 , GLN A:514 , HIS A:515
binding site for Mono-Saccharide NAG A 908 bound to ASN A 413
13
AD4
SOFTWARE
SER A:490 , SER A:501 , LYS A:502 , ASN A:523 , TYR A:546 , ASP A:548
binding site for Mono-Saccharide NAG A 902 bound to ASN A 523
14
AD5
SOFTWARE
ALA A:819 , TYR A:831 , ASN B:45 , ASN B:66 , HIS B:90
binding site for Mono-Saccharide NAG B 910 bound to ASN B 66
15
AD6
SOFTWARE
LYS B:44 , ILE B:48 , ASN B:69 , VAL B:92 , GLU B:93 , SER B:131
binding site for Poly-Saccharide residues NAG B 904 through NAG B 905 bound to ASN B 69
16
AD7
SOFTWARE
CYS B:183 , TYR B:184 , PRO B:188 , CYS B:189 , TYR B:190 , VAL B:191 , SER B:192 , ASN B:215
binding site for Poly-Saccharide residues NAG B 907 through NAG B 908 bound to ASN B 215
17
AD8
SOFTWARE
GLY A:331 , ASP A:332 , LYS A:334 , SER A:363 , GLN A:364 , LYS B:328 , ARG B:357 , ASN B:361
binding site for Mono-Saccharide NAG B 906 bound to ASN B 361
18
AD9
SOFTWARE
ASN B:413 , LYS B:418 , GLN B:514
binding site for Mono-Saccharide NAG B 909 bound to ASN B 413
19
AE1
SOFTWARE
SER B:490 , CYS B:491 , SER B:501 , ASN B:523 , TYR B:546 , ASP B:548
binding site for Mono-Saccharide NAG B 903 bound to ASN B 523
20
AE2
SOFTWARE
ASN C:45 , ASN C:66 , HIS C:90 , ALA D:819 , TYR D:831 , THR D:832
binding site for Mono-Saccharide NAG C 907 bound to ASN C 66
21
AE3
SOFTWARE
CYS C:183 , TYR C:184 , PRO C:188 , CYS C:189 , TYR C:190 , VAL C:191 , SER C:192 , ASN C:215
binding site for Poly-Saccharide residues NAG C 904 through NAG C 905 bound to ASN C 215
22
AE4
SOFTWARE
LYS C:328 , ARG C:357 , ASN C:361 , GLY D:331 , ASP D:332 , SER D:363 , GLN D:364
binding site for Mono-Saccharide NAG C 908 bound to ASN C 361
23
AE5
SOFTWARE
ASN C:413 , SER C:415 , LYS C:418 , GLN C:514 , HIS C:515
binding site for Mono-Saccharide NAG C 909 bound to ASN C 413
24
AE6
SOFTWARE
SER C:490 , SER C:501 , LYS C:502 , ASN C:523 , TYR C:546 , ASP C:548
binding site for Mono-Saccharide NAG C 903 bound to ASN C 523
25
AE7
SOFTWARE
ASN C:534 , SER C:536
binding site for Mono-Saccharide NAG C 910 bound to ASN C 534
26
AE8
SOFTWARE
SER C:559 , MET C:588 , ASN C:590
binding site for Mono-Saccharide NAG C 906 bound to ASN C 590
27
AE9
SOFTWARE
ALA C:819 , TYR C:831 , THR C:832 , ASN D:45 , THR D:65 , ASN D:66 , HIS D:90
binding site for Mono-Saccharide NAG D 909 bound to ASN D 66
28
AF1
SOFTWARE
ILE D:48 , ASN D:69 , GLU D:93 , SER D:131
binding site for Mono-Saccharide NAG D 908 bound to ASN D 69
29
AF2
SOFTWARE
CYS D:183 , TYR D:184 , PRO D:188 , CYS D:189 , TYR D:190 , VAL D:191 , SER D:192 , ASN D:215
binding site for Poly-Saccharide residues NAG D 905 through NAG D 906 bound to ASN D 215
30
AF3
SOFTWARE
GLY C:331 , ASP C:332 , LYS C:334 , SER C:363 , GLN C:364 , LYS D:328 , ARG D:357 , ASN D:361
binding site for Mono-Saccharide NAG D 910 bound to ASN D 361
31
AF4
SOFTWARE
ASN D:413 , SER D:415 , LYS D:418 , GLN D:514
binding site for Mono-Saccharide NAG D 907 bound to ASN D 413
32
AF5
SOFTWARE
SER D:490 , CYS D:491 , SER D:501 , LYS D:502 , ASN D:523 , TYR D:546 , ASP D:548
binding site for Mono-Saccharide NAG D 904 bound to ASN D 523
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
Info
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