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5GG5
Asym. Unit
Info
Asym.Unit (67 KB)
Biol.Unit 1 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM SMEGMATIS MUTT1
Authors
:
S. M. Arif, A. G. Patil, U. Varshney, M. Vijayan
Date
:
15 Jun 16 (Deposition) - 19 Apr 17 (Release) - 19 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.64
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
8-Oxo-Guanine Nucleotides, Sanitization Of Nucleotide Pool, Nudix Enzyme, Histidine Phosphatase Domain, Binding Sites At Intermolecular Interface, Enzyme Action, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Arif, A. G. Patil, U. Varshney, M. Vijayan
Biochemical And Structural Studies Of Mycobacterium Smegmatis Mutt1, A Sanitization Enzyme With Unusual Modes O Association
Acta Crystallogr D Struct V. 73 349 2017 Biol
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(3, 38)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
2a: DI(HYDROXYETHYL)ETHER (PEGa)
2b: DI(HYDROXYETHYL)ETHER (PEGb)
2c: DI(HYDROXYETHYL)ETHER (PEGc)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
24
Ligand/Ion
1,2-ETHANEDIOL
2
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
3
SO4
11
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(38, 38)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:144 , ARG A:169 , HIS A:170 , ARG A:176 , ARG A:186 , ARG A:218 , LYS A:297 , HOH A:558 , HOH A:624
binding site for residue SO4 A 401
02
AC2
SOFTWARE
PRO A:146 , ARG A:149 , ARG A:153 , ARG A:178 , EDO A:412 , HOH A:566
binding site for residue SO4 A 402
03
AC3
SOFTWARE
ARG A:176 , ARG A:184 , ARG A:216 , GLU A:242 , GLU A:243 , GLN A:271 , HOH A:518 , HOH A:520 , HOH A:564 , HOH A:729
binding site for residue SO4 A 403
04
AC4
SOFTWARE
HIS A:88 , ASP A:121 , PHE A:122 , TRP A:133 , EDO A:418 , EDO A:419 , HOH A:525 , HOH A:532 , HOH A:565
binding site for residue SO4 A 404
05
AC5
SOFTWARE
ARG A:98 , THR A:100 , ARG A:109
binding site for residue SO4 A 405
06
AC6
SOFTWARE
ARG A:55 , EDO A:417 , EDO A:421 , EDO A:422 , HOH A:533 , HOH A:644
binding site for residue SO4 A 406
07
AC7
SOFTWARE
LYS A:67 , LYS A:108 , TYR A:245 , LYS A:273 , HOH A:533 , HOH A:656
binding site for residue SO4 A 407
08
AC8
SOFTWARE
SER A:123 , ASP A:189 , LYS A:190 , ARG A:193 , HOH A:517 , HOH A:582
binding site for residue SO4 A 408
09
AC9
SOFTWARE
GLY A:174 , ARG A:175 , EDO A:428 , HOH A:591 , HOH A:664
binding site for residue SO4 A 409
10
AD1
SOFTWARE
VAL A:156 , LYS A:157 , ARG A:158 , PRO A:159 , GLU A:258 , GLY A:261 , ARG A:262 , EDO A:413 , HOH A:514 , HOH A:568
binding site for residue SO4 A 410
11
AD2
SOFTWARE
GLY A:66 , LYS A:67 , EDO A:421 , HOH A:513 , HOH A:516
binding site for residue SO4 A 411
12
AD3
SOFTWARE
THR A:89 , SER A:177 , ARG A:178 , SO4 A:402
binding site for residue EDO A 412
13
AD4
SOFTWARE
PHE A:155 , VAL A:156 , ARG A:158 , GLU A:258 , SO4 A:410
binding site for residue EDO A 413
14
AD5
SOFTWARE
LYS A:157 , THR A:209 , LEU A:230 , GLN A:232 , EDO A:434 , HOH A:638
binding site for residue EDO A 414
15
AD6
SOFTWARE
LYS A:150 , ARG A:153 , MET A:204 , GLU A:229 , HOH A:593
binding site for residue EDO A 415
16
AD7
SOFTWARE
GLU A:84 , GLU A:85 , THR A:86 , GLY A:87 , ASP A:121 , PHE A:122 , SER A:123 , ASN A:125 , HOH A:511
binding site for residue EDO A 416
17
AD8
SOFTWARE
LYS A:65 , TYR A:101 , TYR A:145 , SO4 A:406
binding site for residue EDO A 417
18
AD9
SOFTWARE
LEU A:131 , SO4 A:404 , EDO A:419 , HOH A:535
binding site for residue EDO A 418
19
AE1
SOFTWARE
ARG A:33 , SO4 A:404 , EDO A:418
binding site for residue EDO A 419
20
AE2
SOFTWARE
ALA A:79 , ARG A:178 , TYR A:179 , ALA A:201 , HOH A:546
binding site for residue EDO A 420
21
AE3
SOFTWARE
LYS A:67 , LYS A:108 , SO4 A:406 , SO4 A:411 , EDO A:422
binding site for residue EDO A 421
22
AE4
SOFTWARE
TYR A:101 , LYS A:108 , LYS A:273 , SO4 A:406 , EDO A:421 , HOH A:682
binding site for residue EDO A 422
23
AE5
SOFTWARE
GLU A:280 , THR A:293 , EDO A:429
binding site for residue EDO A 423
24
AE6
SOFTWARE
TRP A:32 , VAL A:91 , GLY A:93 , VAL A:160 , THR A:162 , HOH A:609 , HOH A:712
binding site for residue EDO A 424
25
AE7
SOFTWARE
TYR A:145 , ARG A:169 , ARG A:176 , GLU A:242 , GLY A:272 , HOH A:551
binding site for residue EDO A 425
26
AE8
SOFTWARE
THR A:210 , LEU A:211 , TYR A:212 , GLN A:232 , LEU A:233 , ASP A:307
binding site for residue EDO A 426
27
AE9
SOFTWARE
GLY A:97 , ARG A:98 , LYS A:150 , GLN A:228 , GLU A:229 , GLU A:291
binding site for residue EDO A 427
28
AF1
SOFTWARE
HIS A:83 , ARG A:149 , ARG A:175 , ARG A:176 , SO4 A:409 , HOH A:604
binding site for residue EDO A 428
29
AF2
SOFTWARE
PRO A:56 , THR A:293 , GLY A:294 , EDO A:423 , HOH A:677
binding site for residue EDO A 429
30
AF3
SOFTWARE
GLN A:142 , GLN A:144 , HOH A:508 , HOH A:667
binding site for residue EDO A 430
31
AF4
SOFTWARE
LYS A:190 , ARG A:193 , HOH A:585
binding site for residue EDO A 431
32
AF5
SOFTWARE
LEU A:257 , GLY A:261 , GLY A:308 , HOH A:515 , HOH A:719
binding site for residue EDO A 432
33
AF6
SOFTWARE
MET A:204 , GLY A:207 , ALA A:208 , HOH A:563
binding site for residue EDO A 433
34
AF7
SOFTWARE
LYS A:157 , GLN A:232 , ASP A:307 , EDO A:414 , HOH A:547
binding site for residue EDO A 434
35
AF8
SOFTWARE
ARG A:193 , ALA A:196 , GLU A:197 , GLN A:221 , PRO A:225
binding site for residue EDO A 435
36
AF9
SOFTWARE
ARG A:184 , ASP A:215 , ARG A:216 , VAL A:217 , HIS A:220 , HOH A:504
binding site for residue PEG A 436
37
AG1
SOFTWARE
HIS A:54 , TRP A:61 , LYS A:130 , ARG A:191 , ARG A:296
binding site for residue PEG A 437
38
AG2
SOFTWARE
GLU A:74 , PRO A:75 , THR A:292 , TYR A:315 , LEU A:316 , SER A:317 , HOH A:549 , HOH A:694
binding site for residue PEG A 438
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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