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5G4H
Biol. Unit 1
Info
Asym.Unit (294 KB)
Biol.Unit 1 (852 KB)
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(1)
Title
:
1.50 A RESOLUTION CATECHOL (1,2-DIHYDROXYBENZENE) INHIBITED SPOROSARCINA PASTEURII UREASE
Authors
:
L. Mazzei, M. Cianci, F. Musiani, S. Ciurli
Date
:
13 May 16 (Deposition) - 07 Dec 16 (Release) - 07 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (3x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Mazzei, M. Cianci, F. Musiani, G. Lente, M. Palombo, S. Ciurli
Inactivation Of Urease By Catechol: Kinetics And Structure.
J. Inorg. Biochem. V. 166 182 2016
[
close entry info
]
Hetero Components
(5, 72)
Info
All Hetero Components
1a: CATECHOL (CAQa)
2a: N-CARBOXYMETHIONINE (CXMa)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
4a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
5a: NICKEL (II) ION (NIa)
5b: NICKEL (II) ION (NIb)
6a: HYDROXIDE ION (OHa)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
7d: SULFATE ION (SO4d)
7e: SULFATE ION (SO4e)
7f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAQ
3
Ligand/Ion
CATECHOL
2
CXM
3
Mod. Amino Acid
N-CARBOXYMETHIONINE
3
EDO
45
Ligand/Ion
1,2-ETHANEDIOL
4
KCX
3
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
5
NI
-1
Ligand/Ion
NICKEL (II) ION
6
OH
-1
Ligand/Ion
HYDROXIDE ION
7
SO4
18
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
KCX C:220 , HIS C:222 , HIS C:249 , HIS C:275 , GLY C:280 , NI C:601 , OH C:1573 , HOH C:2176
BINDING SITE FOR RESIDUE NI C 600
02
AC2
SOFTWARE
HIS C:137 , HIS C:139 , KCX C:220 , ASP C:363 , NI C:600 , OH C:1573 , HOH C:2153
BINDING SITE FOR RESIDUE NI C 601
03
AC3
SOFTWARE
HIS C:222 , GLU C:223 , ASP C:224 , HIS C:249 , GLY C:280 , HIS C:323 , ARG C:339 , HOH C:2176 , HOH C:2206 , HOH C:2208 , HOH C:2248 , HOH C:2288
BINDING SITE FOR RESIDUE SO4 C1572
04
AC4
SOFTWARE
HIS C:137 , KCX C:220 , HIS C:275 , ASP C:363 , NI C:600 , NI C:601 , HOH C:2153 , HOH C:2176 , HOH C:2248
BINDING SITE FOR RESIDUE OH C1573
05
AC5
SOFTWARE
VAL C:558 , LYS C:559 , GLU C:560 , HOH C:2415
BINDING SITE FOR RESIDUE SO4 C1574
06
AC6
SOFTWARE
MET A:70 , GLU A:71 , HOH A:2095 , ARG C:566
BINDING SITE FOR RESIDUE SO4 A1101
07
AC7
SOFTWARE
ARG B:116
BINDING SITE FOR RESIDUE SO4 B1127
08
AC8
SOFTWARE
GLY A:50 , LYS A:51 , THR A:52 , PHE A:86 , ASP A:88 , VAL C:309 , ASN C:310 , LYS C:559 , HOH C:2425
BINDING SITE FOR RESIDUE EDO C1575
09
AC9
SOFTWARE
ASP C:34 , THR C:36 , TYR C:38 , HOH C:2048 , HOH C:2060 , HOH C:2426
BINDING SITE FOR RESIDUE EDO C1576
10
BC1
SOFTWARE
ASP C:286 , ALA C:289 , ILE C:537 , ILE C:539 , HOH C:2232 , HOH C:2404
BINDING SITE FOR RESIDUE EDO C1577
11
BC2
SOFTWARE
GLY A:27 , LEU A:28 , LYS A:29 , ASP A:67 , ASP A:68 , HOH A:2032 , HOH A:2040
BINDING SITE FOR RESIDUE EDO A1102
12
BC3
SOFTWARE
HOH B:2079 , GLY C:46 , HIS C:323 , LEU C:325 , PHE C:335 , HOH C:2067 , HOH C:2203
BINDING SITE FOR RESIDUE EDO C1578
13
BC4
SOFTWARE
SER B:71 , TYR C:12 , LYS C:48 , HOH C:2019
BINDING SITE FOR RESIDUE EDO C1579
14
BC5
SOFTWARE
TYR C:35 , TYR C:83 , ILE C:97 , GLU C:429 , HOH C:2045 , HOH C:2428
BINDING SITE FOR RESIDUE EDO C1580
15
BC6
SOFTWARE
ASN A:4 , LYS A:10 , HOH A:2088 , PHE C:568 , PHE C:570 , HOH C:2291 , HOH C:2429
BINDING SITE FOR RESIDUE EDO C1581
16
BC7
SOFTWARE
ASP B:101 , HOH B:2127 , PRO C:229 , ASP C:233 , HOH C:2213 , HOH C:2240
BINDING SITE FOR RESIDUE EDO B1128
17
BC8
SOFTWARE
THR C:237 , ASP C:240 , ARG C:269
BINDING SITE FOR RESIDUE EDO C1582
18
BC9
SOFTWARE
HIS C:422 , GLU C:423 , GLY C:430 , GLN C:501 , HOH C:2327 , HOH C:2383
BINDING SITE FOR RESIDUE EDO C1583
19
CC1
SOFTWARE
TYR C:93 , GLU C:423 , GLN C:501 , ARG C:513 , ILE C:514 , HOH C:2431
BINDING SITE FOR RESIDUE EDO C1584
20
CC2
SOFTWARE
CXM A:1 , TYR A:32 , ASP A:79 , HOH A:2085 , HOH A:2096
BINDING SITE FOR RESIDUE EDO A1103
21
CC3
SOFTWARE
PRO C:143 , GLY C:189 , PRO C:191 , ARG C:478 , HOH C:2071 , HOH C:2158
BINDING SITE FOR RESIDUE EDO C1585
22
CC4
SOFTWARE
PRO C:177 , TRP C:178 , GLU C:181
BINDING SITE FOR RESIDUE EDO C1586
23
CC5
SOFTWARE
ILE B:30 , ARG B:31 , HOH B:2058
BINDING SITE FOR RESIDUE SO4 B1129
24
CC6
SOFTWARE
SER C:204 , ILE C:205 , HOH C:2190 , HOH C:2194
BINDING SITE FOR RESIDUE SO4 C1587
25
CC7
SOFTWARE
HIS C:137 , KCX C:220 , HIS C:275 , ASP C:363 , NI C:600 , NI C:601 , HOH C:2153 , HOH C:2176 , HOH C:2248
BINDING SITE FOR RESIDUE OH C1573
26
CC8
SOFTWARE
MET C:318 , LEU C:319 , MET C:320 , VAL C:321 , HIS C:323 , HIS C:324 , ILE C:468 , PRO C:469 , THR C:470 , HOH C:2172 , HOH C:2173 , HOH C:2424
BINDING SITE FOR DI-PEPTIDE CYS C 322 AND CAQ C1571
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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