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5FZ4
Asym. Unit
Info
Asym.Unit (92 KB)
Biol.Unit 1 (85 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN JARID1B IN COMPLEX WITH 3D FRAGMENT (3R)-1-[(3-PHENYL-1,2,4-OXADIAZOL-5-YL)METHYL]PYRROLIDIN-3-OL (N10057A) (LIGAND MODELLED BASED ON PANDDA EVENT MAP, SGC - DIAMOND I04-1 FRAGMENT SCREENING)
Authors
:
R. Nowak, T. Krojer, N. Pearce, R. Talon, P. Collins, C. Johansson, C. Gi K. Kupinska, C. Strain-Damerell, A. Szykowska, N. A. Burgess-Brown, C. H. Arrowsmith, C. Bountra, A. M. Edwards, F. Von Delft, P. E. Brenna U. Oppermann
Date
:
10 Mar 16 (Deposition) - 23 Mar 16 (Release) - 23 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.07
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Jarid1B, Plu1, Fragment Screening, Structural Genomics Consortium, Sgc, Diamond I04-1, Pandda
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Nowak, T. Krojer, C. Johansson, C. Gileadi, K. Kupinska, C. Strain-Damerell, A. Szykowska, R. Talon, P. Collins, N. A. Burgess-Brown, C. H. Arrowsmith, C. Bountra, A. M. Edwards, F. Von Delft, P. E. Brennan, U. Oppermann
Crystal Structure Of The Catalytic Domain Of Human Jarid1B In Complex With N10057A
To Be Published
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Hetero Components
(7, 19)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
4a: MANGANESE (II) ION (MNa)
5a: (3S)-1-[(3-PHENYL-1,2,4-OXADIAZOL-... (P6Ba)
6a: PHOSPHATE ION (PO4a)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
DMS
3
Ligand/Ion
DIMETHYL SULFOXIDE
3
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
4
MN
1
Ligand/Ion
MANGANESE (II) ION
5
P6B
1
Ligand/Ion
(3S)-1-[(3-PHENYL-1,2,4-OXADIAZOL-5-YL)METHYL]PYRROLIDIN-3-OL
6
PO4
1
Ligand/Ion
PHOSPHATE ION
7
ZN
2
Ligand/Ion
ZINC ION
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:692 , CYS A:695 , CYS A:715 , HIS A:718
BINDING SITE FOR RESIDUE ZN A1754
02
AC2
SOFTWARE
CYS A:706 , CYS A:708 , CYS A:723 , CYS A:725
BINDING SITE FOR RESIDUE ZN A1755
03
AC3
SOFTWARE
GLU A:662 , LYS A:663 , ARG A:666 , ARG A:670 , TYR A:736 , THR A:737 , LEU A:738 , LEU A:741 , EDO A:1761 , HOH A:2203 , HOH A:2204
BINDING SITE FOR RESIDUE P6B A1756
04
AC4
SOFTWARE
HIS A:499 , GLU A:501 , HIS A:587 , HOH A:2103 , HOH A:2104 , HOH A:2109
BINDING SITE FOR RESIDUE MN A1757
05
AC5
SOFTWARE
LEU A:90 , ASN A:91 , LEU A:413 , THR A:416 , GLU A:419 , HOH A:2040
BINDING SITE FOR RESIDUE CL A1758
06
AC6
SOFTWARE
ASP A:630 , CYS A:699 , PHE A:700 , MET A:701 , SER A:702 , EDO A:1762 , HOH A:2154
BINDING SITE FOR RESIDUE EDO A1759
07
AC7
SOFTWARE
PHE A:83 , GLY A:426 , ALA A:427 , ASP A:428 , PHE A:434 , LEU A:487 , VAL A:489
BINDING SITE FOR RESIDUE EDO A1760
08
AC8
SOFTWARE
ARG A:666 , TYR A:734 , P6B A:1756 , HOH A:2204
BINDING SITE FOR RESIDUE EDO A1761
09
AC9
SOFTWARE
ARG A:612 , ASP A:630 , MET A:658 , GLU A:662 , LEU A:665 , EDO A:1759
BINDING SITE FOR RESIDUE EDO A1762
10
BC1
SOFTWARE
PRO A:30 , VAL A:568
BINDING SITE FOR RESIDUE EDO A1763
11
BC2
SOFTWARE
ASP A:688 , GLU A:689 , ARG A:690 , GLN A:691 , VAL A:693 , GLY A:711 , LEU A:713
BINDING SITE FOR RESIDUE EDO A1764
12
BC3
SOFTWARE
GLY A:524 , TYR A:525 , ARG A:584 , HOH A:2205
BINDING SITE FOR RESIDUE EDO A1765
13
BC4
SOFTWARE
ARG A:670 , VAL A:674 , ILE A:675 , HOH A:2077 , HOH A:2169
BINDING SITE FOR RESIDUE EDO A1766
14
BC5
SOFTWARE
LYS A:536 , HIS A:564
BINDING SITE FOR RESIDUE EDO A1767
15
BC6
SOFTWARE
GLN A:88 , GLN A:96 , TYR A:425 , SER A:495 , PHE A:496 , CYS A:497
BINDING SITE FOR RESIDUE EDO A1768
16
BC7
SOFTWARE
TYR A:488 , PHE A:496 , ASN A:509 , LYS A:517 , HOH A:2118
BINDING SITE FOR RESIDUE DMS A1769
17
BC8
SOFTWARE
TRP A:486 , TYR A:488 , VAL A:600 , ASN A:601
BINDING SITE FOR RESIDUE DMS A1770
18
BC9
SOFTWARE
ILE A:500 , TRP A:504 , GLU A:531 , ARG A:584 , HIS A:617 , TYR A:618 , LEU A:621 , HOH A:2108
BINDING SITE FOR RESIDUE DMS A1771
19
CC1
SOFTWARE
HIS A:622 , LYS A:694 , HIS A:718 , HOH A:2140 , HOH A:2144
BINDING SITE FOR RESIDUE PO4 A1772
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SAPs(SNPs)/Variants
(0, 0)
Info
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Asymmetric Unit 1
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Asym.Unit (92 KB)
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Header - Biol.Unit 1
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