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5FZ0
Asym. Unit
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Asym.Unit (89 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN JARID1B IN COMPLEX WITH 2,5-DICHLORO-N-(PYRIDIN-3-YL)THIOPHENE-3-CARBOXAMIDE (N08137B) (LIGAND MODELLED BASED ON PANDDA EVENT MAP, SGC - DIAMOND I04-1 FRAGMENT SCREENING)
Authors
:
R. Nowak, T. Krojer, N. Pearce, C. Johansson, C. Gileadi, K. Kupinska, C. Strain-Damerell, A. Szykowska, N. A. Burgess-Brown, C. H. Arrowsm C. Bountra, A. M. Edwards, F. Von Delft, P. E. Brennan, U. Oppermann
Date
:
10 Mar 16 (Deposition) - 06 Apr 16 (Release) - 08 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.42
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreuctase, Jarid1B, Plu1, Pandda, Fragment Soaking, X-Ray Fragment Screening
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Nowak, T. Krojer, C. Johansson, C. Gileadi, K. Kupinska, C. Strain-Damerell, A. Szykowska, N. A. Burgess-Brown, C. H. Arrowsmith, C. Bountra, A. M. Edwards, F. Von Delft, P. E. Brennan, U. Oppermann
Crystal Structure Of The Catalytic Domain Of Human Jarid1B In Complex With N11213A
To Be Published
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Hetero Components
(8, 15)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 2,5-DICHLORO-N-(PYRIDIN-3-YL)THIOP... (DJ6a)
3a: DIMETHYL SULFOXIDE (DMSa)
3b: DIMETHYL SULFOXIDE (DMSb)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
5a: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEa)
6a: MANGANESE (II) ION (MNa)
7a: PHOSPHATE ION (PO4a)
8a: ZINC ION (ZNa)
8b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
DJ6
1
Ligand/Ion
2,5-DICHLORO-N-(PYRIDIN-3-YL)THIOPHENE-3-CARBOXAMIDE
3
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
4
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
5
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
6
MN
1
Ligand/Ion
MANGANESE (II) ION
7
PO4
1
Ligand/Ion
PHOSPHATE ION
8
ZN
2
Ligand/Ion
ZINC ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:692 , CYS A:695 , CYS A:715 , HIS A:718
BINDING SITE FOR RESIDUE ZN A1754
02
AC2
SOFTWARE
CYS A:706 , CYS A:708 , CYS A:723 , CYS A:725
BINDING SITE FOR RESIDUE ZN A1755
03
AC3
SOFTWARE
TRP A:486 , TYR A:488 , GLU A:501 , SER A:507 , ASN A:601
BINDING SITE FOR RESIDUE DMS A1756
04
AC4
SOFTWARE
THR A:97 , ARG A:98 , SER A:495 , PHE A:496 , CYS A:497 , DJ6 A:1767
BINDING SITE FOR RESIDUE DMS A1757
05
AC5
SOFTWARE
HIS A:499 , GLU A:501 , HIS A:587 , DJ6 A:1767 , HOH A:2032 , HOH A:2037
BINDING SITE FOR RESIDUE MN A1758
06
AC6
SOFTWARE
ILE A:500 , TRP A:504 , LEU A:541 , LEU A:552 , TYR A:586 , HIS A:617 , TYR A:618 , LEU A:621 , ARG A:623 , HOH A:2035 , HOH A:2045 , HOH A:2092
BINDING SITE FOR RESIDUE EPE A1759
07
AC7
SOFTWARE
PHE A:83 , GLY A:426 , ASP A:428 , PHE A:434 , LEU A:487
BINDING SITE FOR RESIDUE EDO A1760
08
AC8
SOFTWARE
ARG A:666 , HOH A:2093
BINDING SITE FOR RESIDUE EDO A1761
09
AC9
SOFTWARE
ARG A:612 , ASP A:630 , MET A:658 , GLU A:662 , HOH A:2088
BINDING SITE FOR RESIDUE EDO A1762
10
BC1
SOFTWARE
GLY A:524 , ARG A:584
BINDING SITE FOR RESIDUE EDO A1763
11
BC2
SOFTWARE
ARG A:670 , VAL A:674 , ILE A:675 , LEU A:732 , HOH A:2068
BINDING SITE FOR RESIDUE EDO A1764
12
BC3
SOFTWARE
TYR A:425 , TYR A:488 , SER A:494 , SER A:495 , LYS A:517 , ASN A:591 , DJ6 A:1767 , HOH A:2042
BINDING SITE FOR RESIDUE EDO A1765
13
BC4
SOFTWARE
LEU A:90 , ASN A:91 , LEU A:413 , THR A:416 , GLU A:419
BINDING SITE FOR RESIDUE CL A1766
14
BC5
SOFTWARE
ARG A:86 , ARG A:98 , VAL A:99 , TYR A:425 , TYR A:488 , SER A:495 , PHE A:496 , HIS A:499 , HIS A:587 , DMS A:1757 , MN A:1758 , EDO A:1765 , HOH A:2032 , HOH A:2037 , HOH A:2040 , HOH A:2042
BINDING SITE FOR RESIDUE DJ6 A1767
15
BC6
SOFTWARE
HIS A:622 , LYS A:694 , HIS A:718 , HOH A:2054
BINDING SITE FOR RESIDUE PO4 A1768
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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