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5FYL
Asym. Unit
Info
Asym.Unit (542 KB)
Biol.Unit 1, α-C (1.5 MB)
Biol.Unit 1 (1.5 MB)
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(1)
Title
:
CRYSTAL STRUCTURE AT 3.7 A RESOLUTION OF FULLY GLYCOSYLATED HIV-1 CLADE A BG505 SOSIP.664 PREFUSION ENV TRIMER IN COMPLEX WITH BROADLY NEUTRALIZING ANTIBODIES PGT122 AND 35O22
Authors
:
G. B. E. Stewart-Jones, T. Zhou, P. V. Thomas, P. D. Kwong
Date
:
08 Mar 16 (Deposition) - 27 Apr 16 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : B,D,E,G,H,L
Biol. Unit 1: B,D,E,G,H,L (3x)
Keywords
:
Viral Protein, Hiv, Envelope, Glycan, Trimer
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. B. E. Stewart-Jones, C. Soto, T. Lemmin, G. Y. Chuang, A. Druz, R. Kong, P. V. Thomas, K. Wagh, T. Zhou, A. J. Behrens, T. Bylund, C. W. Choi, J. R. Davison, I. S. Georgiev, M. G. Joyce, Y. D. Kwon, M. Pancera, J. Taft, Y. Yang, B. Zhang, S. S. Shivatare, V. S. Shivatare C. C. D. Lee, C. Y. Wu, C. A. Bewley, D. R. Burton, W. C. Koff, M. Connors, M. Crispin, B. T. Korber, C. H. Wong, J. R. Mascola, P. D. Kwong
Trimeric Hiv-1-Env Structures Define Glycan Shields From Clades A, B And G
Cell(Cambridge, Mass. ) V. 165 813 2016
[
close entry info
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Hetero Components
(3, 114)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
1m: BETA-D-MANNOSE (BMAm)
1n: BETA-D-MANNOSE (BMAn)
1o: BETA-D-MANNOSE (BMAo)
1p: BETA-D-MANNOSE (BMAp)
1q: BETA-D-MANNOSE (BMAq)
2a: ALPHA-D-MANNOSE (MANa)
2aa: ALPHA-D-MANNOSE (MANaa)
2ab: ALPHA-D-MANNOSE (MANab)
2ac: ALPHA-D-MANNOSE (MANac)
2ad: ALPHA-D-MANNOSE (MANad)
2ae: ALPHA-D-MANNOSE (MANae)
2af: ALPHA-D-MANNOSE (MANaf)
2ag: ALPHA-D-MANNOSE (MANag)
2ah: ALPHA-D-MANNOSE (MANah)
2ai: ALPHA-D-MANNOSE (MANai)
2aj: ALPHA-D-MANNOSE (MANaj)
2ak: ALPHA-D-MANNOSE (MANak)
2al: ALPHA-D-MANNOSE (MANal)
2am: ALPHA-D-MANNOSE (MANam)
2an: ALPHA-D-MANNOSE (MANan)
2ao: ALPHA-D-MANNOSE (MANao)
2ap: ALPHA-D-MANNOSE (MANap)
2aq: ALPHA-D-MANNOSE (MANaq)
2ar: ALPHA-D-MANNOSE (MANar)
2as: ALPHA-D-MANNOSE (MANas)
2at: ALPHA-D-MANNOSE (MANat)
2au: ALPHA-D-MANNOSE (MANau)
2av: ALPHA-D-MANNOSE (MANav)
2aw: ALPHA-D-MANNOSE (MANaw)
2ax: ALPHA-D-MANNOSE (MANax)
2ay: ALPHA-D-MANNOSE (MANay)
2az: ALPHA-D-MANNOSE (MANaz)
2b: ALPHA-D-MANNOSE (MANb)
2ba: ALPHA-D-MANNOSE (MANba)
2bb: ALPHA-D-MANNOSE (MANbb)
2bc: ALPHA-D-MANNOSE (MANbc)
2bd: ALPHA-D-MANNOSE (MANbd)
2be: ALPHA-D-MANNOSE (MANbe)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
2q: ALPHA-D-MANNOSE (MANq)
2r: ALPHA-D-MANNOSE (MANr)
2s: ALPHA-D-MANNOSE (MANs)
2t: ALPHA-D-MANNOSE (MANt)
2u: ALPHA-D-MANNOSE (MANu)
2v: ALPHA-D-MANNOSE (MANv)
2w: ALPHA-D-MANNOSE (MANw)
2x: ALPHA-D-MANNOSE (MANx)
2y: ALPHA-D-MANNOSE (MANy)
2z: ALPHA-D-MANNOSE (MANz)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
3ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
3al: N-ACETYL-D-GLUCOSAMINE (NAGal)
3am: N-ACETYL-D-GLUCOSAMINE (NAGam)
3an: N-ACETYL-D-GLUCOSAMINE (NAGan)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
17
Ligand/Ion
BETA-D-MANNOSE
2
MAN
57
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
40
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:611 , SER B:613
Binding site for Mono-Saccharide NAG B6111 bound to ASN B 611
02
AC2
SOFTWARE
ASN B:618 , ASN E:52 , GLU E:53 , ARG E:54
Binding site for Mono-Saccharide NAG B6181 bound to ASN B 618
03
AC3
SOFTWARE
ASN B:637
Binding site for Poly-Saccharide residues NAG B6371 through BMA B6373 bound to ASN B 637
04
AC4
SOFTWARE
GLY B:527 , SER B:528 , ASN D:30 , PHE D:31 , TYR D:32 , HIS D:33 , SER D:52 , TYR D:53 , ASP D:56 , LYS D:57 , ASN D:58 , ARG D:98 , ASP D:99 , GLY D:100 , SER D:100A , THR D:100C , HIS E:93 , ASN E:94 , ASN G:88
Binding site for Poly-Saccharide residues NAG G 881 through MAN G 888 bound to ASN G 88
05
AC5
SOFTWARE
ASN G:133 , ASP G:140 , LYS G:155 , ARG G:178
Binding site for Poly-Saccharide residues NAG G1331 through NAG G1332 bound to ASN G 133
06
AC6
SOFTWARE
ASN G:137 , GLY H:55 , ASP H:56 , ASN H:58 , ARG H:99 , LYS H:100H , TRP H:100J , THR H:100L , ASP L:92 , ARG L:95 , THR L:95B
Binding site for Poly-Saccharide residues NAG G1371 through MAN G1378 bound to ASN G 137
07
AC7
SOFTWARE
VAL G:134 , ASN G:156 , SER G:158 , TYR G:173 , GLU L:25 , GLU L:26
Binding site for Poly-Saccharide residues NAG G1561 through MAN G1569B bound to ASN G 156
08
AC8
SOFTWARE
SER G:158 , ASN G:160
Binding site for Poly-Saccharide residues NAG G1601 through MAN G1609 bound to ASN G 160
09
AC9
SOFTWARE
ARG G:192 , ILE G:194 , ASN G:197
Binding site for Poly-Saccharide residues NAG G1971 through MAN G1977 bound to ASN G 197
10
BC1
SOFTWARE
ASN G:234 , SER G:274 , GLU G:275 , ILE G:277
Binding site for Poly-Saccharide residues NAG G2341 through MAN G2345 bound to ASN G 234
11
BC2
SOFTWARE
LYS G:59 , LYS G:65 , ASN G:67 , ASN G:262 , GLY G:379 , VAL G:446 , SER G:447
Binding site for Poly-Saccharide residues NAG G2621 through MAN G2629A bound to ASN G 262
12
BC3
SOFTWARE
ASN G:276 , THR G:278 , ASN G:279
Binding site for Poly-Saccharide residues NAG G2761 through MAN G2765 bound to ASN G 276
13
BC4
SOFTWARE
GLN G:293 , ASN G:295 , ASN G:332 , ARG G:444
Binding site for Poly-Saccharide residues NAG G2951 through MAN G2957 bound to ASN G 295
14
BC5
SOFTWARE
ASN G:301 , ILE G:323 , VAL G:442
Binding site for Poly-Saccharide residues NAG G3011 through MAN G3018 bound to ASN G 301
15
BC6
SOFTWARE
THR G:297 , HIS G:330 , ASN G:332 , THR G:415 , ARG H:100 , ILE H:100A , GLY H:100C , VAL H:100D , SER L:30 , ASN L:50 , ASN L:51 , PRO L:66 , GLY L:67 , SER L:67A
Binding site for Poly-Saccharide residues NAG G3321 through MAN G3329 bound to ASN G 332
16
BC7
SOFTWARE
ASN G:339 , THR G:394
Binding site for Mono-Saccharide NAG G3391 bound to ASN G 339
17
BC8
SOFTWARE
LYS G:351 , ASN G:355
Binding site for Mono-Saccharide NAG G3551 bound to ASN G 355
18
BC9
SOFTWARE
ASN G:363 , ASN G:386 , SER G:388
Binding site for Poly-Saccharide residues NAG G3631 through BMA G3633 bound to ASN G 363
19
CC1
SOFTWARE
ASP G:141 , ASN G:386
Binding site for Poly-Saccharide residues NAG G3861 through MAN G3866 bound to ASN G 386
20
CC2
SOFTWARE
ASN G:392
Binding site for Poly-Saccharide residues NAG G3921 through MAN G3926 bound to ASN G 392
21
CC3
SOFTWARE
ASN G:262 , ASN G:448
Binding site for Poly-Saccharide residues NAG G4481 through MAN G4489B bound to ASN G 448
22
CC4
SOFTWARE
THR H:21 , ASN H:23 , LYS H:75 , LEU H:77
Binding site for Poly-Saccharide residues NAG H 231 through MAN H 234 bound to ASN H 23
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (542 KB)
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