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5FYC
Asym. Unit
Info
Asym.Unit (128 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN JMJD2A IN COMPLEX WITH SUCCINATE
Authors
:
R. Nowak, J. Kopec, C. Johansson, A. Szykowska, F. Von Delft, C. H. Arro C. Bountra, A. Edwards, U. Oppermann
Date
:
07 Mar 16 (Deposition) - 16 Mar 16 (Release) - 16 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.26
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Jmjd2A, Kdm4A, Tca Intermediate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Nowak, J. Kopec, C. Johansson, A. Szykowska, F. Von Delft, C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann
Crystal Structure Of Human Jmjd2A In Complex With Succinate
To Be Published
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
2a: FUMARIC ACID (FUMa)
2b: FUMARIC ACID (FUMb)
3a: NICKEL (II) ION (NIa)
3b: NICKEL (II) ION (NIb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
2
FUM
2
Ligand/Ion
FUMARIC ACID
3
NI
2
Ligand/Ion
NICKEL (II) ION
4
SO4
2
Ligand/Ion
SULFATE ION
5
ZN
2
Ligand/Ion
ZINC ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:188 , GLU A:190 , HIS A:276 , FUM A:1354 , HOH A:2080 , HOH A:2084
BINDING SITE FOR RESIDUE NI A 501
02
AC2
SOFTWARE
CYS A:234 , HIS A:240 , CYS A:306 , CYS A:308
BINDING SITE FOR RESIDUE ZN A 502
03
AC3
SOFTWARE
HIS B:188 , GLU B:190 , HIS B:276 , FUM B:1354 , HOH B:2093 , HOH B:2098
BINDING SITE FOR RESIDUE NI B 501
04
AC4
SOFTWARE
CYS B:234 , HIS B:240 , CYS B:306 , CYS B:308
BINDING SITE FOR RESIDUE ZN B 502
05
AC5
SOFTWARE
TYR B:132 , TYR B:177 , HIS B:188 , ASN B:198 , LYS B:206 , TRP B:208 , HIS B:276 , NI B:501 , HOH B:2092 , HOH B:2098 , HOH B:2151
BINDING SITE FOR RESIDUE FUM B1354
06
AC6
SOFTWARE
TYR A:132 , TYR A:177 , PHE A:185 , HIS A:188 , ASN A:198 , LYS A:206 , TRP A:208 , HIS A:276 , NI A:501 , HOH A:2084 , HOH A:2150
BINDING SITE FOR RESIDUE FUM A1354
07
AC7
SOFTWARE
TYR B:121 , TRP B:122 , PHE B:185 , TRP B:187 , LEU B:244 , ILE B:245 , ALA B:277 , GLY B:278
BINDING SITE FOR RESIDUE EDO B1355
08
AC8
SOFTWARE
THR B:83 , PHE B:227 , SER B:230 , THR B:243
BINDING SITE FOR RESIDUE EDO B1356
09
AC9
SOFTWARE
THR A:83 , PHE A:227 , SER A:230 , THR A:243 , HOH A:2107
BINDING SITE FOR RESIDUE EDO A1355
10
BC1
SOFTWARE
LYS A:314 , SER A:316 , MET A:317 , TRP A:332 , HOH A:2151
BINDING SITE FOR RESIDUE EDO A1356
11
BC2
SOFTWARE
TYR B:59 , ARG B:98
BINDING SITE FOR RESIDUE EDO B1357
12
BC3
SOFTWARE
LYS A:89 , LYS A:90
BINDING SITE FOR RESIDUE EDO A1357
13
BC4
SOFTWARE
HIS A:188 , THR A:189 , LEU A:238 , ARG A:239 , TYR A:275
BINDING SITE FOR RESIDUE EDO A1358
14
BC5
SOFTWARE
TYR A:253 , GLY A:254 , HOH A:2112 , HOH A:2152 , HOH A:2153 , ASP B:258 , LYS B:259 , VAL B:260
BINDING SITE FOR RESIDUE EDO A1359
15
BC6
SOFTWARE
LYS A:105 , PHE B:227 , PRO B:228 , GLY B:229 , SER B:230
BINDING SITE FOR RESIDUE SO4 B1358
16
BC7
SOFTWARE
PHE A:227 , PRO A:228 , GLY A:229 , SER A:230 , LYS B:105
BINDING SITE FOR RESIDUE SO4 A1360
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (128 KB)
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