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5FY7
Biol. Unit 1
Info
Asym.Unit (171 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (85 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH SUCCINATE
Authors
:
R. Nowak, T. Krojer, C. Johansson, C. Gileadi, K. Kupinska, F. Von Delf C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann
Date
:
04 Mar 16 (Deposition) - 16 Mar 16 (Release) - 13 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Tca Intermediate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Nowak, T. Krojer, C. Johansson, C. Gileadi, K. Kupinska, F. Von Delft, C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann
Crystal Structure Of Jmjc Domain Of Human Histone Demethylase Uty In Complex With Succinate
To Be Published
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
3a: SUCCINIC ACID (SINa)
3b: SUCCINIC ACID (SINb)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
3
SIN
1
Ligand/Ion
SUCCINIC ACID
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:1199 , CYS A:1202 , CYS A:1226 , CYS A:1229
BINDING SITE FOR RESIDUE ZN A4002
02
AC4
SOFTWARE
HIS A:1014 , GLU A:1016 , HIS A:1094 , SIN A:2267 , HOH A:3154 , HOH A:3163
BINDING SITE FOR RESIDUE MN A2266
03
AC6
SOFTWARE
LYS A:1005 , THR A:1011 , HIS A:1014 , ASN A:1024 , TRP A:1034 , HIS A:1094 , ASN A:1104 , MN A:2266 , HOH A:3148 , HOH A:3154 , HOH A:3163
BINDING SITE FOR RESIDUE SIN A2267
04
AC8
SOFTWARE
SER A:853 , THR A:854 , GLN A:907 , PRO A:1029 , EDO A:2269 , EDO A:2273 , HOH A:3043
BINDING SITE FOR RESIDUE EDO A2268
05
AC9
SOFTWARE
EDO A:2268 , HOH A:3085 , HOH A:3387
BINDING SITE FOR RESIDUE EDO A2269
06
BC1
SOFTWARE
ARG A:1077 , HOH A:3003 , ASN B:919 , GLU B:920
BINDING SITE FOR RESIDUE EDO A2270
07
BC2
SOFTWARE
HIS A:1188 , HIS A:1197 , TYR A:1222 , VAL A:1224
BINDING SITE FOR RESIDUE EDO A2271
08
BC3
SOFTWARE
GLY A:840 , ALA A:842 , GLY A:843 , PRO A:1082 , GLY A:1083 , ASP A:1084 , HOH A:3388
BINDING SITE FOR RESIDUE EDO A2272
09
BC4
SOFTWARE
LYS A:816 , VAL B:1044 , ASP B:1047 , PHE B:1048
BINDING SITE FOR RESIDUE EDO B2276
10
BC7
SOFTWARE
LEU A:849 , GLY A:850 , SER A:853 , GLY A:1028 , EDO A:2268
BINDING SITE FOR RESIDUE EDO A2273
11
BC9
SOFTWARE
GLY A:996 , TYR A:1003 , GLU A:1016 , ALA A:1106 , TRP A:1107 , ASN A:1108 , HOH A:3145 , HOH A:3154
BINDING SITE FOR RESIDUE EDO A2274
12
CC4
SOFTWARE
ARG A:1081 , SER B:914 , GLU B:918 , TRP B:1101
BINDING SITE FOR RESIDUE EDO B2283
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (171 KB)
Header - Asym.Unit
Biol.Unit 1 (84 KB)
Header - Biol.Unit 1
Biol.Unit 2 (85 KB)
Header - Biol.Unit 2
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