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5FXZ
Biol. Unit 2
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Asym.Unit (168 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (83 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH CITRATE
Authors
:
R. Nowak, T. Krojer, C. Johansson, C. Gileadi, K. Kupinska, F. Von Delf C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann
Date
:
03 Mar 16 (Deposition) - 16 Mar 16 (Release) - 16 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Tca Intermediate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Nowak, T. Krojer, C. Johansson, C. Gileadi, K. Kupinska, F. Von Delft, C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann
Crystal Structure Of Jmjc Domain Of Human Histone Demethylase Uty In Complex With Citrate
To Be Published
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
2a: CITRATE ANION (FLCa)
2b: CITRATE ANION (FLCb)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
2
FLC
1
Ligand/Ion
CITRATE ANION
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC7 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC8 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
13: CC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
CYS B:1278 , CYS B:1281 , CYS B:1305 , CYS B:1308
BINDING SITE FOR RESIDUE ZN B4002
02
AC3
SOFTWARE
HIS B:1093 , GLU B:1095 , HIS B:1173 , FLC B:2346 , HOH B:3152
BINDING SITE FOR RESIDUE MN B2345
03
AC5
SOFTWARE
TYR B:1082 , LYS B:1084 , THR B:1090 , HIS B:1093 , GLU B:1095 , SER B:1101 , ASN B:1103 , TRP B:1113 , HIS B:1173 , VAL B:1175 , ALA B:1185 , MN B:2345 , HOH B:3139 , HOH B:3152
BINDING SITE FOR RESIDUE FLC B2346
04
AC7
SOFTWARE
ILE B:967 , TRP B:968 , ARG B:969 , LEU B:1133 , HOH B:3341
BINDING SITE FOR RESIDUE EDO B2347
05
BC1
SOFTWARE
ARG A:1156 , HOH A:3004 , GLU B:999
BINDING SITE FOR RESIDUE EDO A2349
06
BC4
SOFTWARE
LYS A:895 , VAL B:1123 , ASP B:1126 , PHE B:1127
BINDING SITE FOR RESIDUE EDO B2348
07
BC5
SOFTWARE
PHE B:990 , PRO B:1108 , TRP B:1180 , EDO B:2350 , HOH B:3091
BINDING SITE FOR RESIDUE EDO B2349
08
BC6
SOFTWARE
SER B:932 , THR B:933 , GLN B:986 , GLY B:1107 , PRO B:1108 , ASN B:1182 , EDO B:2349 , EDO B:2355
BINDING SITE FOR RESIDUE EDO B2350
09
BC8
SOFTWARE
LEU B:1050 , ARG B:1058 , VAL B:1059 , VAL B:1060
BINDING SITE FOR RESIDUE EDO B2351
10
CC1
SOFTWARE
HIS B:943 , ASP B:1036 , ASP B:1039 , LYS B:1042 , HOH B:3049
BINDING SITE FOR RESIDUE EDO B2352
11
CC2
SOFTWARE
LYS B:1207 , CYS B:1281 , HOH B:3207 , HOH B:3208
BINDING SITE FOR RESIDUE EDO B2353
12
CC3
SOFTWARE
PRO B:910 , PRO B:913 , ASN B:1168 , ALA B:1169 , CYS B:1194 , LEU B:1198 , HOH B:3165
BINDING SITE FOR RESIDUE EDO B2354
13
CC4
SOFTWARE
LEU B:928 , SER B:932 , GLY B:1107 , PRO B:1108 , EDO B:2350
BINDING SITE FOR RESIDUE EDO B2355
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (168 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (83 KB)
Header - Biol.Unit 2
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