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5FXZ
Asym. Unit
Info
Asym.Unit (168 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (83 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN COMPLEX WITH CITRATE
Authors
:
R. Nowak, T. Krojer, C. Johansson, C. Gileadi, K. Kupinska, F. Von Delf C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann
Date
:
03 Mar 16 (Deposition) - 16 Mar 16 (Release) - 16 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Tca Intermediate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Nowak, T. Krojer, C. Johansson, C. Gileadi, K. Kupinska, F. Von Delft, C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann
Crystal Structure Of Jmjc Domain Of Human Histone Demethylase Uty In Complex With Citrate
To Be Published
[
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Hetero Components
(4, 23)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
2a: CITRATE ANION (FLCa)
2b: CITRATE ANION (FLCb)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
17
Ligand/Ion
1,2-ETHANEDIOL
2
FLC
2
Ligand/Ion
CITRATE ANION
3
MN
2
Ligand/Ion
MANGANESE (II) ION
4
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:1278 , CYS A:1281 , CYS A:1305 , CYS A:1308
BINDING SITE FOR RESIDUE ZN A4002
02
AC2
SOFTWARE
CYS B:1278 , CYS B:1281 , CYS B:1305 , CYS B:1308
BINDING SITE FOR RESIDUE ZN B4002
03
AC3
SOFTWARE
HIS B:1093 , GLU B:1095 , HIS B:1173 , FLC B:2346 , HOH B:3152
BINDING SITE FOR RESIDUE MN B2345
04
AC4
SOFTWARE
HIS A:1093 , GLU A:1095 , HIS A:1173 , FLC A:2346 , HOH A:3165
BINDING SITE FOR RESIDUE MN A2345
05
AC5
SOFTWARE
TYR B:1082 , LYS B:1084 , THR B:1090 , HIS B:1093 , GLU B:1095 , SER B:1101 , ASN B:1103 , TRP B:1113 , HIS B:1173 , VAL B:1175 , ALA B:1185 , MN B:2345 , HOH B:3139 , HOH B:3152
BINDING SITE FOR RESIDUE FLC B2346
06
AC6
SOFTWARE
TYR A:1082 , LYS A:1084 , THR A:1090 , HIS A:1093 , GLU A:1095 , SER A:1101 , ASN A:1103 , TRP A:1113 , HIS A:1173 , VAL A:1175 , ALA A:1185 , MN A:2345 , EDO A:2353 , HOH A:3160 , HOH A:3165
BINDING SITE FOR RESIDUE FLC A2346
07
AC7
SOFTWARE
ILE B:967 , TRP B:968 , ARG B:969 , LEU B:1133 , HOH B:3341
BINDING SITE FOR RESIDUE EDO B2347
08
AC8
SOFTWARE
SER A:932 , THR A:933 , GLN A:986 , PRO A:1108 , ASN A:1182 , EDO A:2348 , EDO A:2352
BINDING SITE FOR RESIDUE EDO A2347
09
AC9
SOFTWARE
PHE A:990 , TRP A:1180 , EDO A:2347 , HOH A:3092
BINDING SITE FOR RESIDUE EDO A2348
10
BC1
SOFTWARE
ARG A:1156 , HOH A:3004 , GLU B:999
BINDING SITE FOR RESIDUE EDO A2349
11
BC2
SOFTWARE
HIS A:1267 , GLU A:1273 , HIS A:1276 , TYR A:1301
BINDING SITE FOR RESIDUE EDO A2350
12
BC3
SOFTWARE
GLY A:919 , ALA A:921 , GLY A:922 , PRO A:1161 , GLY A:1162 , ASP A:1163 , HOH A:3204 , HOH A:3369 , HOH A:3370
BINDING SITE FOR RESIDUE EDO A2351
13
BC4
SOFTWARE
LYS A:895 , VAL B:1123 , ASP B:1126 , PHE B:1127
BINDING SITE FOR RESIDUE EDO B2348
14
BC5
SOFTWARE
PHE B:990 , PRO B:1108 , TRP B:1180 , EDO B:2350 , HOH B:3091
BINDING SITE FOR RESIDUE EDO B2349
15
BC6
SOFTWARE
SER B:932 , THR B:933 , GLN B:986 , GLY B:1107 , PRO B:1108 , ASN B:1182 , EDO B:2349 , EDO B:2355
BINDING SITE FOR RESIDUE EDO B2350
16
BC7
SOFTWARE
LEU A:928 , GLY A:929 , SER A:932 , ILE A:1106 , EDO A:2347 , HOH A:3371
BINDING SITE FOR RESIDUE EDO A2352
17
BC8
SOFTWARE
LEU B:1050 , ARG B:1058 , VAL B:1059 , VAL B:1060
BINDING SITE FOR RESIDUE EDO B2351
18
BC9
SOFTWARE
GLY A:1075 , GLN A:1080 , TYR A:1082 , GLU A:1095 , ALA A:1185 , TRP A:1186 , ASN A:1187 , FLC A:2346 , HOH A:3165
BINDING SITE FOR RESIDUE EDO A2353
19
CC1
SOFTWARE
HIS B:943 , ASP B:1036 , ASP B:1039 , LYS B:1042 , HOH B:3049
BINDING SITE FOR RESIDUE EDO B2352
20
CC2
SOFTWARE
LYS B:1207 , CYS B:1281 , HOH B:3207 , HOH B:3208
BINDING SITE FOR RESIDUE EDO B2353
21
CC3
SOFTWARE
PRO B:910 , PRO B:913 , ASN B:1168 , ALA B:1169 , CYS B:1194 , LEU B:1198 , HOH B:3165
BINDING SITE FOR RESIDUE EDO B2354
22
CC4
SOFTWARE
LEU B:928 , SER B:932 , GLY B:1107 , PRO B:1108 , EDO B:2350
BINDING SITE FOR RESIDUE EDO B2355
23
CC5
SOFTWARE
THR A:908 , ASN A:1168 , PRO A:1190 , THR A:1192 , CYS A:1194
BINDING SITE FOR RESIDUE EDO A2354
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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wireframe 100
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Asym.Unit (168 KB)
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Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (83 KB)
Header - Biol.Unit 2
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