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5FVI
Asym. Unit
Info
Asym.Unit (342 KB)
Biol.Unit 1 (335 KB)
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(1)
Title
:
STRUCTURE OF IRISFP IN MINERAL GREASE AT 100 K.
Authors
:
J. P. Colletier, F. X. Gallat, N. Coquelle, M. Weik
Date
:
07 Feb 16 (Deposition) - 13 Apr 16 (Release) - 13 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Fluorescent Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Colletier, M. Sliwa, F. Gallat, M. Sugahara, V. Guillon, G. Schiro, N. Coquelle, J. Woodhouse, L. Roux, G. Gotthard, A. Royant, L. M. Uriarte, C. Ruckebusch, Y. Joti, M. Byrdin, E. Mizohata, E. Nango T. Tanaka, K. Tono, M. Yabashi, V. Adam, M. Cammarata, I. Schlichting, D. Bourgeois, M. Weik
Serial Femtosecond Crystallography And Ultrafast Absorption Spectroscopy Of The Photoswitchable Fluorescent Protein Irisfp.
J. Phys. Chem. Lett. V. 7 882 2016
[
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Hetero Components
(2, 27)
Info
All Hetero Components
1a: 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETH... (CR8a)
1b: 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETH... (CR8b)
1c: 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETH... (CR8c)
1d: 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETH... (CR8d)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CR8
4
Mod. Amino Acid
2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1-(CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE
2
SO4
23
Ligand/Ion
SULFATE ION
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:202 , LYS A:203
BINDING SITE FOR RESIDUE SO4 A1224
02
AC2
SOFTWARE
ASP A:150 , HOH A:2215 , HOH A:2216 , HOH A:2219 , ALA D:167
BINDING SITE FOR RESIDUE SO4 A1225
03
AC3
SOFTWARE
LYS A:85 , GLU A:181 , LYS A:182
BINDING SITE FOR RESIDUE SO4 A1226
04
AC4
SOFTWARE
ASN A:17 , HIS A:22 , HOH A:2026 , HOH A:2291 , HOH A:2292 , HOH A:2293
BINDING SITE FOR RESIDUE SO4 A1227
05
AC5
SOFTWARE
LYS A:182 , GLY A:183 , VAL A:184
BINDING SITE FOR RESIDUE SO4 A1228
06
AC6
SOFTWARE
GLY A:47 , HOH A:2294 , HOH A:2295
BINDING SITE FOR RESIDUE SO4 A1229
07
AC7
SOFTWARE
ARG A:119 , HOH A:2174 , ASN B:17 , HIS B:22 , HIS B:121
BINDING SITE FOR RESIDUE SO4 B1224
08
AC8
SOFTWARE
GLY B:47 , HOH B:2068 , HOH B:2071 , HOH B:2248
BINDING SITE FOR RESIDUE SO4 B1225
09
AC9
SOFTWARE
LYS B:134 , HOH B:2159 , HOH B:2237 , HOH B:2238 , HOH B:2249
BINDING SITE FOR RESIDUE SO4 B1226
10
BC1
SOFTWARE
ALA B:167 , HOH B:2193 , HOH B:2195 , HOH B:2197 , ASP C:150 , HOH C:2165
BINDING SITE FOR RESIDUE SO4 C1224
11
BC2
SOFTWARE
LYS A:37 , TYR A:211 , HOH A:2057 , HIS B:-1 , HOH B:2214 , LYS C:9 , HOH C:2207
BINDING SITE FOR RESIDUE SO4 C1225
12
BC3
SOFTWARE
ASN C:17 , HIS C:22 , HIS C:121 , HOH C:2014 , HOH C:2016 , HOH C:2017 , ARG D:119
BINDING SITE FOR RESIDUE SO4 C1226
13
BC4
SOFTWARE
GLU C:46 , GLY C:47 , GLY C:48
BINDING SITE FOR RESIDUE SO4 C1227
14
BC5
SOFTWARE
LYS C:182 , HOH C:2169 , HOH C:2184 , HOH C:2186 , HOH C:2208
BINDING SITE FOR RESIDUE SO4 C1228
15
BC6
SOFTWARE
ASP C:202 , LYS C:203
BINDING SITE FOR RESIDUE SO4 C1229
16
BC7
SOFTWARE
ALA A:167 , HOH A:2233 , HOH A:2236 , ARG D:149 , ASP D:150 , HOH D:2121 , HOH D:2154
BINDING SITE FOR RESIDUE SO4 D1224
17
BC8
SOFTWARE
ARG C:119 , HOH C:2137 , ASN D:17 , HIS D:22 , HIS D:121
BINDING SITE FOR RESIDUE SO4 D1225
18
BC9
SOFTWARE
ASP D:202 , LYS D:203 , HOH D:2155 , HOH D:2156
BINDING SITE FOR RESIDUE SO4 D1226
19
CC1
SOFTWARE
LYS D:45 , GLU D:46 , GLY D:47 , GLY D:48 , HOH D:2041
BINDING SITE FOR RESIDUE SO4 D1227
20
CC2
SOFTWARE
TYR D:211 , HOH D:2157
BINDING SITE FOR RESIDUE SO4 D1228
21
CC3
SOFTWARE
HOH C:2021 , HOH C:2141 , LYS D:178 , HOH D:2158 , HOH D:2159
BINDING SITE FOR RESIDUE SO4 D1229
22
CC4
SOFTWARE
LYS D:182 , GLY D:183 , HOH D:2124
BINDING SITE FOR RESIDUE SO4 D1230
23
CC5
SOFTWARE
TYR D:205 , HOH D:2106 , HOH D:2108 , HOH D:2146
BINDING SITE FOR RESIDUE SO4 D1231
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (342 KB)
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