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5FT8
Biol. Unit 2
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (375 KB)
Biol.Unit 2 (374 KB)
Biol.Unit 3 (367 KB)
Biol.Unit 4 (348 KB)
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Title
:
STRUCTURE OF A CYSTEINE DESULFURASE-SULFUR ACCEPTOR COMPLEX FROM ESCHERICHIA COLI AT 2.50 ANGSTROEM RESOLUTION
Authors
:
F. J. Fernandez, A. Arda, M. Lopez-Estepa, J. Aranda, E. Penya-Soler, F A. Round, R. Campos-Oliva, M. Bruix, M. Coll, I. Tunon, J. Jimenez-Bar M. C. Vega
Date
:
11 Jan 16 (Deposition) - 23 Nov 16 (Release) - 23 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Transferase, L-Cysteine Desulfurase, Sulfur Acceptor, Transpersulfuration, Sulfur Trafficking
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. J. Fernandez, A. Arda, M. Lopez-Estepa, J. Aranda, E. Penya-Soler, F. Garces, J. F. Quintana, A. Round, R. Campos-Oliva, M. Bruix, M. Coll I. Tunon, J. Jimenez-Barbero, M. C. Vega
Mechanism Of Sulfur Transfer Across Protein-Protein Interfaces: The Cysteine Desulfurase Model System
Acs Catalysis V. 6 3975 2016
[
close entry info
]
Hetero Components
(4, 31)
Info
All Hetero Components
1a: S-MERCAPTOCYSTEINE (CSSa)
1b: S-MERCAPTOCYSTEINE (CSSb)
1c: S-MERCAPTOCYSTEINE (CSSc)
1d: S-MERCAPTOCYSTEINE (CSSd)
1e: S-MERCAPTOCYSTEINE (CSSe)
1f: S-MERCAPTOCYSTEINE (CSSf)
1g: S-MERCAPTOCYSTEINE (CSSg)
1h: S-MERCAPTOCYSTEINE (CSSh)
1i: S-MERCAPTOCYSTEINE (CSSi)
1j: S-MERCAPTOCYSTEINE (CSSj)
1k: S-MERCAPTOCYSTEINE (CSSk)
1l: S-MERCAPTOCYSTEINE (CSSl)
1m: S-MERCAPTOCYSTEINE (CSSm)
1n: S-MERCAPTOCYSTEINE (CSSn)
1o: S-MERCAPTOCYSTEINE (CSSo)
2a: GLYCEROL (GOLa)
2aa: GLYCEROL (GOLaa)
2ab: GLYCEROL (GOLab)
2ac: GLYCEROL (GOLac)
2ad: GLYCEROL (GOLad)
2ae: GLYCEROL (GOLae)
2af: GLYCEROL (GOLaf)
2ag: GLYCEROL (GOLag)
2ah: GLYCEROL (GOLah)
2ai: GLYCEROL (GOLai)
2aj: GLYCEROL (GOLaj)
2ak: GLYCEROL (GOLak)
2al: GLYCEROL (GOLal)
2am: GLYCEROL (GOLam)
2an: GLYCEROL (GOLan)
2ao: GLYCEROL (GOLao)
2ap: GLYCEROL (GOLap)
2aq: GLYCEROL (GOLaq)
2ar: GLYCEROL (GOLar)
2as: GLYCEROL (GOLas)
2at: GLYCEROL (GOLat)
2au: GLYCEROL (GOLau)
2av: GLYCEROL (GOLav)
2aw: GLYCEROL (GOLaw)
2ax: GLYCEROL (GOLax)
2ay: GLYCEROL (GOLay)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
2u: GLYCEROL (GOLu)
2v: GLYCEROL (GOLv)
2w: GLYCEROL (GOLw)
2x: GLYCEROL (GOLx)
2y: GLYCEROL (GOLy)
2z: GLYCEROL (GOLz)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
3e: DI(HYDROXYETHYL)ETHER (PEGe)
3f: DI(HYDROXYETHYL)ETHER (PEGf)
3g: DI(HYDROXYETHYL)ETHER (PEGg)
3h: DI(HYDROXYETHYL)ETHER (PEGh)
3i: DI(HYDROXYETHYL)ETHER (PEGi)
3j: DI(HYDROXYETHYL)ETHER (PEGj)
3k: DI(HYDROXYETHYL)ETHER (PEGk)
3l: DI(HYDROXYETHYL)ETHER (PEGl)
3m: DI(HYDROXYETHYL)ETHER (PEGm)
3n: DI(HYDROXYETHYL)ETHER (PEGn)
3o: DI(HYDROXYETHYL)ETHER (PEGo)
3p: DI(HYDROXYETHYL)ETHER (PEGp)
4a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
4b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
4c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
4d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
4e: PYRIDOXAL-5'-PHOSPHATE (PLPe)
4f: PYRIDOXAL-5'-PHOSPHATE (PLPf)
4g: PYRIDOXAL-5'-PHOSPHATE (PLPg)
4h: PYRIDOXAL-5'-PHOSPHATE (PLPh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSS
4
Mod. Residue
S-MERCAPTOCYSTEINE
2
GOL
19
Ligand/Ion
GLYCEROL
3
PEG
6
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: BC9 (SOFTWARE)
02: EC1 (SOFTWARE)
03: EC3 (SOFTWARE)
04: EC4 (SOFTWARE)
05: EC5 (SOFTWARE)
06: EC6 (SOFTWARE)
07: EC7 (SOFTWARE)
08: EC8 (SOFTWARE)
09: EC9 (SOFTWARE)
10: FC1 (SOFTWARE)
11: FC2 (SOFTWARE)
12: FC3 (SOFTWARE)
13: FC4 (SOFTWARE)
14: FC5 (SOFTWARE)
15: FC6 (SOFTWARE)
16: FC7 (SOFTWARE)
17: FC8 (SOFTWARE)
18: FC9 (SOFTWARE)
19: GC1 (SOFTWARE)
20: GC2 (SOFTWARE)
21: GC3 (SOFTWARE)
22: GC4 (SOFTWARE)
23: GC5 (SOFTWARE)
24: GC6 (SOFTWARE)
25: GC7 (SOFTWARE)
26: GC8 (SOFTWARE)
27: GC9 (SOFTWARE)
28: HC1 (SOFTWARE)
29: HC2 (SOFTWARE)
30: HC3 (SOFTWARE)
31: HC4 (SOFTWARE)
32: HC5 (SOFTWARE)
33: HC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC9
SOFTWARE
SER B:126 , ALA B:127 , SER B:128 , ARG B:129 , SER B:130 , GLN B:131 , GLU G:155
BINDING SITE FOR RESIDUE PEG B1153
02
EC1
SOFTWARE
VAL A:137 , ASP C:258 , GLU F:18 , ARG F:21
BINDING SITE FOR RESIDUE GOL C1418
03
EC3
SOFTWARE
LEU D:27 , LYS D:33 , GLU D:118 , LEU D:119 , GLY D:120 , LYS E:136
BINDING SITE FOR RESIDUE GOL D1153
04
EC4
SOFTWARE
THR E:90 , THR E:91 , HIS E:119 , ASN E:171 , ASP E:196 , ALA E:198 , GLN E:199 , SER E:219 , HIS E:221 , LYS E:222 , HOH E:2069 , HOH E:2175 , HOH E:2176 , THR G:273
BINDING SITE FOR RESIDUE PLP E1402
05
EC5
SOFTWARE
HIS E:119 , HIS E:120 , GLN E:356 , HIS E:357 , ALA E:359 , GLY G:249 , LYS G:250
BINDING SITE FOR RESIDUE CSS E1403
06
EC6
SOFTWARE
ARG E:302
BINDING SITE FOR RESIDUE PEG E1404
07
EC7
SOFTWARE
ASP E:212 , GOL E:1417 , HOH E:2177
BINDING SITE FOR RESIDUE PEG E1405
08
EC8
SOFTWARE
GLN E:132
BINDING SITE FOR RESIDUE PEG E1406
09
EC9
SOFTWARE
ARG E:103 , GLN E:132 , HOH E:2178 , HOH E:2179 , ARG G:103
BINDING SITE FOR RESIDUE PEG E1407
10
FC1
SOFTWARE
THR E:262 , GLN E:263
BINDING SITE FOR RESIDUE GOL E1408
11
FC2
SOFTWARE
GLU E:237 , ALA E:241
BINDING SITE FOR RESIDUE GOL E1409
12
FC3
SOFTWARE
GLU E:66
BINDING SITE FOR RESIDUE GOL E1410
13
FC4
SOFTWARE
GLN A:59 , PRO E:104 , ARG E:105 , GLN E:107
BINDING SITE FOR RESIDUE GOL E1411
14
FC5
SOFTWARE
ARG E:10 , LEU E:16 , GLN E:17
BINDING SITE FOR RESIDUE GOL E1412
15
FC6
SOFTWARE
HOH E:2174 , ASP I:149
BINDING SITE FOR RESIDUE GOL E1413
16
FC7
SOFTWARE
CYS E:176 , PRO E:177 , ASP E:178 , GLN E:324 , HOH E:2101
BINDING SITE FOR RESIDUE GOL E1414
17
FC8
SOFTWARE
ASP E:80 , LYS E:82
BINDING SITE FOR RESIDUE GOL E1415
18
FC9
SOFTWARE
ASN E:77
BINDING SITE FOR RESIDUE GOL E1416
19
GC1
SOFTWARE
PEG E:1405
BINDING SITE FOR RESIDUE GOL E1417
20
GC2
SOFTWARE
GLY E:355 , HIS E:357 , HOH E:2161 , GLY F:60 , GLU F:62 , ASN F:63
BINDING SITE FOR RESIDUE CSS F1145
21
GC3
SOFTWARE
THR E:273 , HOH E:2127 , HOH E:2137 , THR G:90 , THR G:91 , HIS G:119 , ASN G:171 , ASP G:196 , ALA G:198 , GLN G:199 , SER G:219 , HIS G:221 , LYS G:222
BINDING SITE FOR RESIDUE PLP G1402
22
GC4
SOFTWARE
GLY E:249 , HOH E:2126 , HIS G:119 , HIS G:120 , GLN G:356 , HIS G:357 , ALA G:359
BINDING SITE FOR RESIDUE CSS G1403
23
GC5
SOFTWARE
GLN E:131 , ASP G:258
BINDING SITE FOR RESIDUE PEG G1404
24
GC6
SOFTWARE
ASN E:49 , HOH E:2043 , ASP G:24 , VAL G:342 , LEU G:352 , ARG G:353 , HOH G:2024
BINDING SITE FOR RESIDUE GOL G1405
25
GC7
SOFTWARE
SER G:303 , THR G:306 , LEU G:307
BINDING SITE FOR RESIDUE GOL G1406
26
GC8
SOFTWARE
MET G:1
BINDING SITE FOR RESIDUE GOL G1407
27
GC9
SOFTWARE
HIS G:51 , PHE G:55
BINDING SITE FOR RESIDUE GOL G1408
28
HC1
SOFTWARE
PRO G:79 , ASP G:80
BINDING SITE FOR RESIDUE GOL G1409
29
HC2
SOFTWARE
ALA G:313 , ARG G:315 , PRO G:316 , GLY G:317 , PHE G:318 , HOH G:2169
BINDING SITE FOR RESIDUE GOL G1410
30
HC3
SOFTWARE
GLN G:40
BINDING SITE FOR RESIDUE GOL G1411
31
HC4
SOFTWARE
GLN G:356 , GLY H:60 , GLU H:62 , ASN H:63
BINDING SITE FOR RESIDUE CSS H1151
32
HC5
SOFTWARE
PRO H:48 , ASP H:49
BINDING SITE FOR RESIDUE PEG H1152
33
HC6
SOFTWARE
GLN A:17 , ARG C:52 , SER C:53 , GLN H:146 , LYS H:148
BINDING SITE FOR RESIDUE GOL H1153
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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)
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (1.4 MB)
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Biol.Unit 1 (375 KB)
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