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5FSD
Asym. Unit
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Asym.Unit (150 KB)
Biol.Unit 1 (420 KB)
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(1)
Title
:
1.75 A RESOLUTION 2,5-DIHYDROXYBENZENSULFONATE INHIBITED SPOROSARCINA PASTEURII UREASE
Authors
:
L. Mazzei, M. Cianci, F. Musiani, S. Ciurli
Date
:
04 Jan 16 (Deposition) - 23 Mar 16 (Release) - 06 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (3x)
Keywords
:
Hydrolase, Urease, Sporosarcina Pasteurii, Nickel, Metalloenzyme, 2, 5-Dihydroxybenzensulfonate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Mazzei, M. Cianci, F. Musiani, S. Ciurli
Inactivation Of Urease By 1, 4-Benzoquinone: Chemistry At The Protein Surface.
Dalton Trans V. 45 5455 2016
[
close entry info
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Hetero Components
(7, 29)
Info
All Hetero Components
1a: N-CARBOXYMETHIONINE (CXMa)
2a: 2,5-DIHYDROXYBENZENESULFONIC ACID (DBXa)
2b: 2,5-DIHYDROXYBENZENESULFONIC ACID (DBXb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
4a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
5a: NICKEL (II) ION (NIa)
5b: NICKEL (II) ION (NIb)
6a: HYDROXIDE ION (OHa)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
7d: SULFATE ION (SO4d)
7e: SULFATE ION (SO4e)
7f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CXM
1
Mod. Amino Acid
N-CARBOXYMETHIONINE
2
DBX
2
Ligand/Ion
2,5-DIHYDROXYBENZENESULFONIC ACID
3
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
4
KCX
1
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
5
NI
2
Ligand/Ion
NICKEL (II) ION
6
OH
1
Ligand/Ion
HYDROXIDE ION
7
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
KCX C:220 , HIS C:222 , HIS C:249 , HIS C:275 , GLY C:280 , NI C:601 , OH C:1584 , HOH C:2165
BINDING SITE FOR RESIDUE NI C 600
02
AC2
SOFTWARE
HIS C:137 , HIS C:139 , KCX C:220 , ASP C:363 , NI C:600 , OH C:1584 , HOH C:2143
BINDING SITE FOR RESIDUE NI C 601
03
AC3
SOFTWARE
ASP C:34 , THR C:36 , TYR C:38 , HOH C:2040 , HOH C:2054 , HOH C:2406
BINDING SITE FOR RESIDUE EDO C1572
04
AC4
SOFTWARE
TYR C:60 , ASN C:65 , ILE C:114 , SO4 C:1585 , HOH C:2128
BINDING SITE FOR RESIDUE EDO C1573
05
AC5
SOFTWARE
HIS C:422 , GLY C:430 , GLN C:501 , HOH C:2317
BINDING SITE FOR RESIDUE EDO C1574
06
AC6
SOFTWARE
TYR C:93 , GLU C:423 , GLN C:501 , ARG C:513 , ILE C:514 , HOH C:2409
BINDING SITE FOR RESIDUE EDO C1575
07
AC7
SOFTWARE
PRO C:143 , GLY C:189 , ARG C:478 , HOH C:2410
BINDING SITE FOR RESIDUE EDO C1576
08
AC8
SOFTWARE
LYS A:10 , THR A:85 , THR A:90 , PHE C:570 , HOH C:2411
BINDING SITE FOR RESIDUE EDO C1577
09
AC9
SOFTWARE
ASP B:101 , HOH B:2118 , PRO C:229 , ASP C:233 , HOH C:2204 , HOH C:2234
BINDING SITE FOR RESIDUE EDO B1127
10
BC1
SOFTWARE
HOH B:2069 , GLY C:46 , HIS C:323 , LEU C:325 , PHE C:335 , HOH C:2194
BINDING SITE FOR RESIDUE EDO C1578
11
BC2
SOFTWARE
SER B:71 , THR B:73 , ASN C:43 , LYS C:48 , HOH C:2010 , HOH C:2015
BINDING SITE FOR RESIDUE EDO C1579
12
BC3
SOFTWARE
GLY A:50 , LYS A:51 , THR A:52 , PHE A:86 , ASP A:88 , HOH A:2082 , VAL C:309 , ASN C:310 , LYS C:559
BINDING SITE FOR RESIDUE EDO A1102
13
BC4
SOFTWARE
ASP C:286 , ALA C:289 , ILE C:539 , HOH C:2225
BINDING SITE FOR RESIDUE EDO C1580
14
BC5
SOFTWARE
TYR A:32 , MET A:76 , ASP A:78 , ASP A:79
BINDING SITE FOR RESIDUE EDO A1103
15
BC6
SOFTWARE
GLY A:27 , LYS A:29 , ASP A:67 , ASP A:68 , HOH A:2032 , HOH A:2038
BINDING SITE FOR RESIDUE EDO A1104
16
BC7
SOFTWARE
PHE A:42 , GLU A:59 , MET B:83 , GLU B:84 , HOH B:2098 , HOH B:2143
BINDING SITE FOR RESIDUE EDO B1128
17
BC8
SOFTWARE
TYR C:35 , TYR C:83 , ILE C:97 , GLU C:429 , HOH C:2037 , HOH C:2048 , HOH C:2412
BINDING SITE FOR RESIDUE EDO C1581
18
BC9
SOFTWARE
LYS C:33 , TYR C:35 , HOH C:2048
BINDING SITE FOR RESIDUE EDO C1582
19
CC1
SOFTWARE
HIS C:222 , GLU C:223 , HIS C:249 , GLY C:280 , HIS C:323 , ARG C:339 , HOH C:2196 , HOH C:2199 , HOH C:2243
BINDING SITE FOR RESIDUE SO4 C1583
20
CC2
SOFTWARE
HIS C:137 , KCX C:220 , HIS C:275 , ASP C:363 , NI C:600 , NI C:601 , HOH C:2143 , HOH C:2165 , HOH C:2243
BINDING SITE FOR RESIDUE OH C1584
21
CC3
SOFTWARE
SER C:204 , ILE C:205 , EDO C:1573 , HOH C:2180 , HOH C:2184
BINDING SITE FOR RESIDUE SO4 C1585
22
CC4
SOFTWARE
MET A:70 , GLU A:71 , ARG C:566
BINDING SITE FOR RESIDUE SO4 A1105
23
CC5
SOFTWARE
ARG B:116 , HOH B:2135
BINDING SITE FOR RESIDUE SO4 B1129
24
CC6
SOFTWARE
VAL C:558 , LYS C:559 , GLU C:560 , HOH C:2397
BINDING SITE FOR RESIDUE SO4 C1586
25
CC7
SOFTWARE
THR B:29 , ILE B:30 , ARG B:31 , HOH B:2052 , HOH B:2053 , HOH B:2081
BINDING SITE FOR RESIDUE SO4 B1130
26
CC8
SOFTWARE
LYS C:169 , VAL C:321 , CYS C:322 , PRO C:469 , THR C:470 , HOH C:2162 , HOH C:2414
BINDING SITE FOR RESIDUE DBX C1587
27
CC9
SOFTWARE
GLN C:387 , ARG C:388 , THR C:554 , CYS C:555 , GLU C:556 , HOH C:2415 , HOH C:2416
BINDING SITE FOR RESIDUE DBX C1588
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
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