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5FOB
Asym. Unit
Info
Asym.Unit (616 KB)
Biol.Unit 1 (604 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN COMPLEMENT C3B IN COMPLEX WITH SMALLPOX INHIBITOR OF COMPLEMENT (SPICE)
Authors
:
F. Forneris, J. Wu, X. Xue, P. Gros
Date
:
18 Nov 15 (Deposition) - 06 Apr 16 (Release) - 01 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Lipid Binding Protein, Complement System, Immune System, Plasma Protein, Regulators Of Complement Activity, Cofactor Activity, Decay Accelerating Activity, Immune Evasion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Forneris, J. Wu, X. Xue, D. Ricklin, Z. Lin, G. Sfyroera, A. Tzekou, E. Volokhina, J. C. Granneman, R. Hauhart, P. Bertram, M. K. Liszewski J. P. Atkinson, J. D. Lambris, P. Gros
Regulators Of Complement Activity Mediate Inhibitory Mechanisms Through A Common C3B-Binding Mode.
Embo J. V. 35 1133 2016
[
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Hetero Components
(7, 44)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: ALPHA-L-FUCOSE (FUCa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
4o: GLYCEROL (GOLo)
4p: GLYCEROL (GOLp)
4q: GLYCEROL (GOLq)
4r: GLYCEROL (GOLr)
4s: GLYCEROL (GOLs)
4t: GLYCEROL (GOLt)
4u: GLYCEROL (GOLu)
4v: GLYCEROL (GOLv)
4w: GLYCEROL (GOLw)
4x: GLYCEROL (GOLx)
5a: IODIDE ION (IODa)
5b: IODIDE ION (IODb)
5c: IODIDE ION (IODc)
5d: IODIDE ION (IODd)
5e: IODIDE ION (IODe)
5f: IODIDE ION (IODf)
5g: IODIDE ION (IODg)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6a: SODIUM ION (NAa)
6b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CL
5
Ligand/Ion
CHLORIDE ION
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
GOL
24
Ligand/Ion
GLYCEROL
5
IOD
7
Ligand/Ion
IODIDE ION
6
NA
2
Ligand/Ion
SODIUM ION
7
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:505
BINDING SITE FOR RESIDUE CL A1665
02
AC2
SOFTWARE
LYS A:263 , TYR B:854 , GLN B:856 , LYS B:891
BINDING SITE FOR RESIDUE GOL B2664
03
AC3
SOFTWARE
ILE B:755 , ILE B:756 , GLU B:758 , ARG B:863 , GLU B:865 , GLN B:883 , LYS B:913 , ALA B:915
BINDING SITE FOR RESIDUE GOL B2665
04
AC4
SOFTWARE
GLN B:1152 , LYS B:1155 , GLN B:1198 , MET B:1199
BINDING SITE FOR RESIDUE GOL B2666
05
AC5
SOFTWARE
GLU A:286 , ASP C:98 , SER C:107 , THR C:109
BINDING SITE FOR RESIDUE GOL C1259
06
AC6
SOFTWARE
ARG B:841 , THR B:905 , PRO B:933 , ASP B:973 , GLU B:975
BINDING SITE FOR RESIDUE GOL B2667
07
AC7
SOFTWARE
PHE B:1069 , LYS B:1071 , ARG B:1072
BINDING SITE FOR RESIDUE GOL B2668
08
AC8
SOFTWARE
ARG A:290 , TYR B:1428
BINDING SITE FOR RESIDUE GOL A1666
09
AC9
SOFTWARE
ASN B:1556 , ASP B:1557
BINDING SITE FOR RESIDUE GOL B2669
10
BC1
SOFTWARE
TYR C:52 , ALA C:68 , TRP C:75 , LEU C:77
BINDING SITE FOR RESIDUE GOL C1260
11
BC2
SOFTWARE
LYS A:427 , LYS A:428 , GLN A:429 , GLU A:433 , GLN A:436 , VAL B:957 , LYS B:959
BINDING SITE FOR RESIDUE GOL A1667
12
BC3
SOFTWARE
GLU B:1138 , ASP B:1140 , MET B:1141 , HOH B:2062
BINDING SITE FOR RESIDUE GOL B2670
13
BC4
SOFTWARE
HIS B:1002 , TYR B:1262
BINDING SITE FOR RESIDUE GOL B2671
14
BC5
SOFTWARE
LYS B:1381 , ASN B:1382 , GLN B:1465 , TYR B:1466 , ASN B:1468
BINDING SITE FOR RESIDUE GOL B2672
15
BC6
SOFTWARE
ASN B:1359 , ARG B:1393
BINDING SITE FOR RESIDUE GOL B2673
16
BC7
SOFTWARE
GLU A:248 , LYS A:249 , SER A:303 , ARG A:304 , LYS A:305
BINDING SITE FOR RESIDUE GOL A1668
17
BC8
SOFTWARE
MET A:201 , LYS A:225 , GLU A:226 , HOH A:2098
BINDING SITE FOR RESIDUE GOL A1669
18
BC9
SOFTWARE
LEU A:260 , GLY A:262 , LYS A:600 , THR B:801 , GLU B:822 , THR B:824
BINDING SITE FOR RESIDUE GOL A1670
19
CC1
SOFTWARE
LEU B:1505 , ARG B:1512 , GLU B:1515 , ASN B:1517 , PRO B:1587 , LYS B:1589
BINDING SITE FOR RESIDUE GOL B2674
20
CC2
SOFTWARE
GLY A:578 , GLN A:579 , GLN A:580
BINDING SITE FOR RESIDUE GOL A1671
21
CC3
SOFTWARE
HIS B:1002 , GLY B:1263 , GLY B:1264 , GLY B:1265 , GLU B:1530
BINDING SITE FOR RESIDUE GOL B2675
22
CC4
SOFTWARE
ILE A:132 , SER A:219 , THR A:220 , ASN A:609 , LEU A:611 , GOL A:1673
BINDING SITE FOR RESIDUE GOL A1672
23
CC5
SOFTWARE
SER A:219 , THR A:220 , GLU A:221 , ASN A:609 , GOL A:1672
BINDING SITE FOR RESIDUE GOL A1673
24
CC6
SOFTWARE
GLU A:266 , HIS A:333 , SER A:334 , SER B:893
BINDING SITE FOR RESIDUE GOL A1674
25
CC7
SOFTWARE
PRO A:292 , GLU A:299
BINDING SITE FOR RESIDUE GOL A1675
26
CC8
SOFTWARE
PRO A:527 , ASP A:554 , VAL A:555 , ASP A:557
BINDING SITE FOR RESIDUE NA A1676
27
CC9
SOFTWARE
ILE B:793 , PHE B:794 , HOH B:2001
BINDING SITE FOR RESIDUE CL B2676
28
DC1
SOFTWARE
ASP B:832 , LEU B:833 , LYS B:927 , HOH B:2023
BINDING SITE FOR RESIDUE NA B2677
29
DC2
SOFTWARE
GLU A:39 , ASN A:153 , LYS A:155
BINDING SITE FOR RESIDUE IOD A1677
30
DC3
SOFTWARE
PHE A:62 , GLU B:1032
BINDING SITE FOR RESIDUE IOD B2678
31
DC4
SOFTWARE
ARG A:304
BINDING SITE FOR RESIDUE IOD A1678
32
DC5
SOFTWARE
ALA B:757 , ASN B:760 , HOH B:2007
BINDING SITE FOR RESIDUE IOD B2679
33
DC6
SOFTWARE
LYS B:1139 , HOH B:2054 , HOH B:2058
BINDING SITE FOR RESIDUE IOD B2680
34
DC7
SOFTWARE
LYS B:1105 , ASN B:1163
BINDING SITE FOR RESIDUE IOD B2681
35
DC8
SOFTWARE
TRP C:136
BINDING SITE FOR RESIDUE CL C1261
36
DC9
SOFTWARE
LYS B:1105 , GLN B:1161
BINDING SITE FOR RESIDUE CL B2682
37
EC1
SOFTWARE
CYS C:54
BINDING SITE FOR RESIDUE CL C1262
38
EC2
SOFTWARE
VAL A:43 , MET A:83 , GLY A:84 , ASN A:85 , THR A:87 , ALA A:503 , GLY A:504 , HOH A:2097
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A1062 THROUGH BMA A1065 BOUND TO ASN A 85
39
EC3
SOFTWARE
ASN A:200 , ASN B:939
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1939 THROUGH NAG B1940 BOUND TO ASN B 939
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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View:
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
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Hetero
Ligand
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
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