 |
Jmol._Canvas2D (Jmol) "jmolJena3D"[x]
loadClass core.package
loadClass java.lang.String
loadClass core.package
JSmol exec jmolJena3D start applet null
Jmol JavaScript applet jmolJena3D__33625734845669__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript true
AppletRegistry.checkIn(jmolJena3D__33625734845669__)
nographics false
nographics false
headless false
vwrOptions:
{ "name":"jmolJena3D","applet":true,"documentBase":"http://jenalib.leibniz-fli.de/cgi-bin/3d_mapping.pl?CODE=5flk&MODE=asymmetric","platform":"J.awtjs2d.Platform","messagecallback":"_jmolMessageCallback","allowjavascript":true,"fullName":"jmolJena3D__33625734845669__","codePath":"http://jenalib.leibniz-fli.de/ImgLibPDB/jmol/jmol-14.4.0_2015.10.17/jsmol/j2s/","display":"jmolJena3D_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"33625734845669","bgcolor":"black" }
setting document base to "http://jenalib.leibniz-fli.de/cgi-bin/3d_mapping.pl?CODE=5flk&MODE=asymmetric"
(C) 2015 Jmol Development
Jmol Version: 14.4.0_2015.10.14 2015-10-17 18:11
java.vendor: Java2Script (HTML5)
java.version: 2015-10-17 18:21:06 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolJena3D (signed)
loadClass JS.ScriptManager
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor black
backgroundColor = "black"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue IMAGECallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback _jmolMessageCallback
MESSAGECallback = "_jmolMessageCallback"
callback set for MESSAGECallback _jmolMessageCallback MESSAGE
Jmol getValue MINIMIZATIONCallback null
Jmol getValue SERVICECallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue doTranslate null
Note -- Presence of message callback disables disable translation; to enable message translation use jmolSetTranslation(true) prior to jmolApplet()
Note -- language translation disabled
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolJena3D__33625734845669__ ready
script 1 started
loadClass J.shape.Echo
Please wait...
loadClass JV.PropertyManager
ribbonBorder = true
defaultColorScheme = "rasmol"
chainCaseSensitive = true
FileManager opening url http://jenalib.leibniz-fli.de/ImgLibPDB/tmp/5FLK_snp.pdb.asymmetric.default-3255294.jmz
loadClass JM.Resolver
Loading file, please wait...
FileManager.getAtomSetCollectionFromFile(http://jenalib.leibniz-fli.de/cgi-bin/idb_send.pl?CODE=5FLK&MODE=.bin-compressed-asymmetric)
FileManager opening url http://jenalib.leibniz-fli.de/cgi-bin/idb_send.pl?CODE=5FLK&MODE=.bin-compressed-asymmetric
The Resolver thinks Pdb
HYDROLASE 26-OCT-15 5FLK
STRUCTURE OF HALOALKANE DEHALOGENASE VARIANT DHAA101
found biomolecule 1: A
biomolecule 1: number of transforms: 1
Setting space group name to P 1
loadClass J.adapter.smarter.XtalSymmetry
loadClass JU.Tensor
Time for openFile(http://jenalib.leibniz-fli.de/cgi-bin/idb_send.pl?CODE=5FLK&MODE=.bin-compressed-asymmetric): 1298 ms
reading 2890 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: AB
Default Van der Waals type for model set to Jmol
2890 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
HYDROLASE 26-OCT-15 5FLK
STRUCTURE OF HALOALKANE DEHALOGENASE VARIANT DHAA101
found biomolecule 1: A
loadClass JS.MathExt
Preparing view, please wait...
2890 atoms selected
2536 atoms selected
2536 atoms selected
1425 atoms selected
424 atoms selected
0 atoms selected
2536 atoms selected
0 atoms selected
0 atoms selected
0 atoms selected
0 atoms selected
0 atoms selected
0 atoms selected
0 atoms selected
0 atoms selected
0 atoms selected
0 atoms selected
0 atoms selected
0 atoms selected
38 atoms selected
20 atoms selected
0 atoms selected
0 atoms selected
38 atoms selected
0 atoms selected
1 atoms selected
1 atoms selected
18 atoms selected
2536 atoms selected
loadClass J.g3d.HermiteRenderer
loadClass J.thread.MoveToThread