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5FLJ
Asym. Unit
Info
Asym.Unit (809 KB)
Biol.Unit 1 (140 KB)
Biol.Unit 2 (137 KB)
Biol.Unit 3 (137 KB)
Biol.Unit 4 (138 KB)
Biol.Unit 5 (138 KB)
Biol.Unit 6 (138 KB)
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(1)
Title
:
ENZYME-SUBSTRATE-DIOXYGEN COMPLEX OF NI-QUERCETINASE
Authors
:
J. -H. Jeoung, D. Nianios, S. Fetzner, H. Dobbek
Date
:
26 Oct 15 (Deposition) - 01 Jun 16 (Release) - 01 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: C,D (1x)
Biol. Unit 2: K,L (1x)
Biol. Unit 3: G,H (1x)
Biol. Unit 4: E,F (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: A,B (1x)
Keywords
:
Oxidoreductase, Dioxygenase, Nickel, Streptomyces, Ni-Quercetinase, Dioxygen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Jeoung, D. Nianios, S. Fetzner, H. Dobbek
Quercetin 2, 4-Dioxygenase Activates Dioxygen In A Side-On O2 -Ni Complex.
Angew. Chem. Int. Ed. Engl. V. 55 3281 2016
[
close entry info
]
Hetero Components
(4, 41)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
1b: DIMETHYL SULFOXIDE (DMSb)
1c: DIMETHYL SULFOXIDE (DMSc)
1d: DIMETHYL SULFOXIDE (DMSd)
1e: DIMETHYL SULFOXIDE (DMSe)
1f: DIMETHYL SULFOXIDE (DMSf)
1g: DIMETHYL SULFOXIDE (DMSg)
1h: DIMETHYL SULFOXIDE (DMSh)
1i: DIMETHYL SULFOXIDE (DMSi)
1j: DIMETHYL SULFOXIDE (DMSj)
1k: DIMETHYL SULFOXIDE (DMSk)
1l: DIMETHYL SULFOXIDE (DMSl)
1m: DIMETHYL SULFOXIDE (DMSm)
1n: DIMETHYL SULFOXIDE (DMSn)
1o: DIMETHYL SULFOXIDE (DMSo)
2a: NICKEL (II) ION (NIa)
2b: NICKEL (II) ION (NIb)
2c: NICKEL (II) ION (NIc)
2d: NICKEL (II) ION (NId)
2e: NICKEL (II) ION (NIe)
2f: NICKEL (II) ION (NIf)
2g: NICKEL (II) ION (NIg)
2h: NICKEL (II) ION (NIh)
2i: NICKEL (II) ION (NIi)
2j: NICKEL (II) ION (NIj)
2k: NICKEL (II) ION (NIk)
2l: NICKEL (II) ION (NIl)
3a: OXYGEN MOLECULE (OXYa)
3b: OXYGEN MOLECULE (OXYb)
4a: 3,5,7,3',4'-PENTAHYDROXYFLAVONE (QUEa)
4b: 3,5,7,3',4'-PENTAHYDROXYFLAVONE (QUEb)
4c: 3,5,7,3',4'-PENTAHYDROXYFLAVONE (QUEc)
4d: 3,5,7,3',4'-PENTAHYDROXYFLAVONE (QUEd)
4e: 3,5,7,3',4'-PENTAHYDROXYFLAVONE (QUEe)
4f: 3,5,7,3',4'-PENTAHYDROXYFLAVONE (QUEf)
4g: 3,5,7,3',4'-PENTAHYDROXYFLAVONE (QUEg)
4h: 3,5,7,3',4'-PENTAHYDROXYFLAVONE (QUEh)
4i: 3,5,7,3',4'-PENTAHYDROXYFLAVONE (QUEi)
4j: 3,5,7,3',4'-PENTAHYDROXYFLAVONE (QUEj)
4k: 3,5,7,3',4'-PENTAHYDROXYFLAVONE (QUEk)
4l: 3,5,7,3',4'-PENTAHYDROXYFLAVONE (QUEl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DMS
15
Ligand/Ion
DIMETHYL SULFOXIDE
2
NI
12
Ligand/Ion
NICKEL (II) ION
3
OXY
2
Ligand/Ion
OXYGEN MOLECULE
4
QUE
12
Ligand/Ion
3,5,7,3',4'-PENTAHYDROXYFLAVONE
[
close Hetero Component info
]
Sites
(41, 41)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:69 , HIS A:71 , GLU A:76 , HIS A:115 , QUE A:301 , HOH A:2069
BINDING SITE FOR RESIDUE NI A 300
02
AC2
SOFTWARE
LEU A:35 , PHE A:36 , HIS A:69 , HIS A:71 , GLU A:76 , VAL A:77 , PHE A:78 , TYR A:117 , VAL A:126 , GLY A:128 , PHE A:140 , PHE A:141 , PHE A:176 , NI A:300 , HOH A:2049 , HOH A:2069
BINDING SITE FOR RESIDUE QUE A 301
03
AC3
SOFTWARE
HIS B:69 , HIS B:71 , GLU B:76 , HIS B:115 , QUE B:301 , HOH B:2072
BINDING SITE FOR RESIDUE NI B 300
04
AC4
SOFTWARE
LEU B:35 , ILE B:66 , HIS B:69 , HIS B:71 , GLU B:76 , VAL B:77 , PHE B:78 , TYR B:117 , VAL B:126 , GLY B:128 , PHE B:137 , PHE B:140 , PHE B:141 , PHE B:176 , NI B:300 , HOH B:2045 , HOH B:2072
BINDING SITE FOR RESIDUE QUE B 301
05
AC5
SOFTWARE
HIS C:69 , HIS C:71 , GLU C:76 , HIS C:115 , QUE C:301 , OXY C:302
BINDING SITE FOR RESIDUE NI C 300
06
AC6
SOFTWARE
LEU C:35 , PHE C:36 , CYS C:58 , HIS C:69 , HIS C:71 , GLU C:76 , VAL C:77 , PHE C:78 , VAL C:126 , GLY C:128 , PHE C:140 , PHE C:141 , PHE C:176 , NI C:300 , OXY C:302 , HOH C:2036
BINDING SITE FOR RESIDUE QUE C 301
07
AC7
SOFTWARE
HIS C:69 , GLU C:76 , PHE C:78 , HIS C:115 , NI C:300 , QUE C:301
BINDING SITE FOR RESIDUE OXY C 302
08
AC8
SOFTWARE
HIS D:69 , HIS D:71 , GLU D:76 , HIS D:115 , QUE D:301 , HOH D:2065
BINDING SITE FOR RESIDUE NI D 300
09
AC9
SOFTWARE
LEU D:35 , PHE D:36 , HIS D:69 , HIS D:71 , GLU D:76 , VAL D:77 , PHE D:78 , TYR D:117 , VAL D:126 , GLY D:128 , PHE D:137 , PHE D:140 , PHE D:141 , PHE D:176 , NI D:300 , HOH D:2041 , HOH D:2065
BINDING SITE FOR RESIDUE QUE D 301
10
BC1
SOFTWARE
HIS E:69 , HIS E:71 , GLU E:76 , HIS E:115 , QUE E:301 , HOH E:2070
BINDING SITE FOR RESIDUE NI E 300
11
BC2
SOFTWARE
LEU E:35 , CYS E:58 , ILE E:66 , HIS E:69 , HIS E:71 , GLU E:76 , VAL E:77 , TYR E:117 , VAL E:126 , GLY E:128 , PHE E:137 , PHE E:140 , PHE E:141 , PHE E:176 , NI E:300 , HOH E:2070
BINDING SITE FOR RESIDUE QUE E 301
12
BC3
SOFTWARE
HIS F:69 , HIS F:71 , GLU F:76 , HIS F:115 , QUE F:301 , OXY F:302
BINDING SITE FOR RESIDUE NI F 300
13
BC4
SOFTWARE
LEU F:35 , PHE F:36 , HIS F:69 , HIS F:71 , GLU F:76 , VAL F:77 , TYR F:117 , VAL F:126 , GLY F:128 , PHE F:140 , PHE F:141 , NI F:300 , OXY F:302 , HOH F:2043
BINDING SITE FOR RESIDUE QUE F 301
14
BC5
SOFTWARE
HIS F:69 , GLU F:76 , PHE F:78 , HIS F:115 , NI F:300 , QUE F:301
BINDING SITE FOR RESIDUE OXY F 302
15
BC6
SOFTWARE
HIS G:69 , HIS G:71 , GLU G:76 , HIS G:115 , QUE G:301 , HOH G:2061
BINDING SITE FOR RESIDUE NI G 300
16
BC7
SOFTWARE
LEU G:35 , PHE G:36 , ILE G:66 , HIS G:69 , HIS G:71 , GLU G:76 , VAL G:77 , TYR G:117 , VAL G:126 , GLY G:128 , PHE G:137 , PHE G:140 , PHE G:141 , PHE G:176 , NI G:300 , HOH G:2040 , HOH G:2061
BINDING SITE FOR RESIDUE QUE G 301
17
BC8
SOFTWARE
HIS H:69 , HIS H:71 , GLU H:76 , HIS H:115 , QUE H:301 , HOH H:2059
BINDING SITE FOR RESIDUE NI H 300
18
BC9
SOFTWARE
LEU H:35 , PHE H:56 , HIS H:69 , HIS H:71 , GLU H:76 , VAL H:77 , PHE H:78 , TYR H:117 , VAL H:126 , GLY H:128 , PHE H:137 , PHE H:140 , PHE H:141 , PHE H:176 , NI H:300 , HOH H:2040 , HOH H:2059
BINDING SITE FOR RESIDUE QUE H 301
19
CC1
SOFTWARE
HIS I:69 , HIS I:71 , GLU I:76 , HIS I:115 , QUE I:301 , HOH I:2051
BINDING SITE FOR RESIDUE NI I 300
20
CC2
SOFTWARE
LEU I:35 , PHE I:36 , HIS I:69 , HIS I:71 , GLU I:76 , VAL I:77 , PHE I:78 , TYR I:117 , VAL I:126 , GLY I:128 , PHE I:140 , PHE I:141 , PHE I:176 , NI I:300 , HOH I:2030 , HOH I:2051
BINDING SITE FOR RESIDUE QUE I 301
21
CC3
SOFTWARE
HIS J:69 , HIS J:71 , GLU J:76 , HIS J:115 , QUE J:301 , HOH J:2044
BINDING SITE FOR RESIDUE NI J 300
22
CC4
SOFTWARE
LEU J:35 , PHE J:36 , ILE J:66 , HIS J:69 , HIS J:71 , GLU J:76 , VAL J:77 , PHE J:78 , TYR J:117 , VAL J:126 , GLY J:128 , PHE J:140 , PHE J:141 , PHE J:176 , NI J:300 , HOH J:2029 , HOH J:2044
BINDING SITE FOR RESIDUE QUE J 301
23
CC5
SOFTWARE
HIS K:69 , HIS K:71 , GLU K:76 , HIS K:115 , QUE K:301 , HOH K:2050
BINDING SITE FOR RESIDUE NI K 300
24
CC6
SOFTWARE
LEU K:35 , PHE K:36 , PHE K:56 , HIS K:69 , HIS K:71 , GLU K:76 , VAL K:77 , PHE K:78 , TYR K:117 , VAL K:126 , GLY K:128 , PHE K:140 , PHE K:141 , PHE K:176 , NI K:300 , HOH K:2033 , HOH K:2050
BINDING SITE FOR RESIDUE QUE K 301
25
CC7
SOFTWARE
HIS L:69 , HIS L:71 , GLU L:76 , HIS L:115 , QUE L:301 , HOH L:2049
BINDING SITE FOR RESIDUE NI L 300
26
CC8
SOFTWARE
LEU L:35 , HIS L:69 , HIS L:71 , GLU L:76 , VAL L:77 , TYR L:117 , VAL L:126 , GLY L:128 , PHE L:140 , PHE L:141 , PHE L:176 , NI L:300 , HOH L:2027 , HOH L:2049
BINDING SITE FOR RESIDUE QUE L 301
27
CC9
SOFTWARE
TYR A:79 , PRO A:103 , GLY A:104 , LYS B:27 , THR B:81 , GLN B:82 , GLN B:125
BINDING SITE FOR RESIDUE DMS B1186
28
DC1
SOFTWARE
LYS A:27 , THR A:81 , GLN A:82 , GLN A:125 , TYR B:79 , GLY B:104
BINDING SITE FOR RESIDUE DMS A1185
29
DC2
SOFTWARE
TYR C:79 , GLY C:104 , HOH C:2071 , LYS D:27 , GLN D:82 , GLN D:125
BINDING SITE FOR RESIDUE DMS D1186
30
DC3
SOFTWARE
GLN C:82 , GLN C:125 , TYR D:79 , THR D:81 , GLY D:104
BINDING SITE FOR RESIDUE DMS D1187
31
DC4
SOFTWARE
TYR E:79 , PRO E:103 , GLY E:104 , HOH E:2078 , LYS F:27 , THR F:81 , HOH F:2037
BINDING SITE FOR RESIDUE DMS E1186
32
DC5
SOFTWARE
GLN E:82 , GLN E:125 , HOH E:2037 , TYR F:79 , PRO F:103 , GLY F:104 , HOH F:2066
BINDING SITE FOR RESIDUE DMS F1186
33
DC6
SOFTWARE
GLN G:82 , GLN G:125 , TYR H:79
BINDING SITE FOR RESIDUE DMS H1186
34
DC7
SOFTWARE
GLN G:82 , HOH G:2071 , TYR L:79 , ILE L:80 , THR L:81 , PRO L:103 , GLY L:104
BINDING SITE FOR RESIDUE DMS L1186
35
DC8
SOFTWARE
GLN I:82 , GLN I:125 , TYR J:79 , THR J:81 , GLY J:104
BINDING SITE FOR RESIDUE DMS J1186
36
DC9
SOFTWARE
TYR I:79 , ILE I:80 , GLY I:104 , HOH I:2057 , LYS J:27 , HOH J:2025
BINDING SITE FOR RESIDUE DMS I1186
37
EC1
SOFTWARE
ARG E:12 , PHE E:14 , LEU E:29 , GLY E:30 , ARG E:32 , HOH E:2018
BINDING SITE FOR RESIDUE DMS E1187
38
EC2
SOFTWARE
GLY D:134 , THR D:136 , TYR D:172 , ASP D:173 , HOH D:2070
BINDING SITE FOR RESIDUE DMS D1188
39
EC3
SOFTWARE
GLU G:47 , GLU G:138 , ARG G:139 , HOH G:2096
BINDING SITE FOR RESIDUE DMS G1186
40
EC4
SOFTWARE
GLY H:134 , THR H:136 , TYR H:172 , ASP H:173 , HOH H:2068
BINDING SITE FOR RESIDUE DMS H1187
41
EC5
SOFTWARE
GLY K:46 , GLU K:47 , ASN K:51 , THR K:136 , GLU K:138 , ARG K:139 , HOH K:2007
BINDING SITE FOR RESIDUE DMS K1186
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(0, 0)
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(mutated residues are not available)
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