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5FKP
Asym. Unit
Info
Asym.Unit (147 KB)
Biol.Unit 1 (140 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MOUSE CD1D IN COMPLEX WITH THE P99 PEPTIDE
Authors
:
E. Girardi, J. Wang, D. M. Zajonc
Date
:
18 Oct 15 (Deposition) - 30 Mar 16 (Release) - 01 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Immune System, Cd1D, Antigen Presentation, Alpha-Helical
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Girardi, J. Wang, D. M. Zajonc
Structure Of An Alpha-Helical Peptide And Lipopeptide Bound To The Non-Classical Mhc Class I Molecule Cd1D
J. Biol. Chem. V. 291 10677 2016
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Hetero Components
(7, 13)
Info
All Hetero Components
1a: TETRACOSYL PALMITATE (6ULa)
2a: BETA-D-MANNOSE (BMAa)
3a: ALPHA-L-FUCOSE (FUCa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
5a: ALPHA-D-MANNOSE (MANa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7a: D(-)-TARTARIC ACID (TARa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
6UL
1
Ligand/Ion
TETRACOSYL PALMITATE
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
GOL
4
Ligand/Ion
GLYCEROL
5
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
TAR
1
Ligand/Ion
D(-)-TARTARIC ACID
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:28 , PHE A:70 , TYR A:73 , TRP A:133 , LEU A:163 , CYS A:168
BINDING SITE FOR RESIDUE 6UL A1287
2
AC2
SOFTWARE
TRP A:31 , ASP A:34 , PRO A:239 , ASN A:240 , GLU A:243 , THR A:244 , TRP A:245 , GOL A:1289 , HOH A:2017 , HOH A:2184
BINDING SITE FOR RESIDUE GOL A1288
3
AC3
SOFTWARE
TRP A:31 , GOL A:1288 , HOH A:2020 , HOH A:2022 , HOH A:2153 , HOH A:2184 , HOH A:2185 , HOH A:2186 , TYR B:63 , LEU B:65
BINDING SITE FOR RESIDUE GOL A1289
4
AC4
SOFTWARE
PRO A:217 , VAL A:218 , LYS A:266 , HIS A:267 , SER A:268 , HOH A:2120 , HOH A:2124 , HOH A:2187
BINDING SITE FOR RESIDUE GOL A1290
5
AC5
SOFTWARE
TRP A:192 , HIS A:209 , TYR A:246 , HOH A:2113 , VAL B:9 , TYR B:10 , SER B:11 , PRO B:15 , TRP B:95 , ASP B:96 , MET B:99
BINDING SITE FOR RESIDUE GOL B1100
6
AC6
SOFTWARE
ILE B:35 , GLU B:36 , ILE B:37 , MET B:54 , ILE B:64 , HOH B:2034 , HOH B:2038
BINDING SITE FOR RESIDUE TAR B1101
7
AC7
SOFTWARE
ALA A:19 , ASN A:20 , TRP A:23
BINDING SITE FOR MONO-SACCHARIDE NAG A1286 BOUND TO ASN A 20
8
AC8
SOFTWARE
TRP A:23 , SER A:24 , ASN A:42 , HOH A:2013
BINDING SITE FOR MONO-SACCHARIDE NAG A1280 BOUND TO ASN A 42
9
AC9
SOFTWARE
LYS A:57 , GLU A:113 , SER A:114 , TRP A:129 , GLY A:130 , THR A:131 , GLN A:161 , ASN A:165 , GLU A:177 , ALA A:178 , LYS A:180 , SER A:181 , HOH A:2068 , HOH A:2093 , HOH A:2094 , HOH A:2180 , HOH A:2181 , HOH A:2182 , ASN B:42 , GLY B:43 , THR B:77
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1281 THROUGH FUC A1285 BOUND TO ASN A 165
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (147 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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