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5FJ1
Biol. Unit 1
Info
Asym.Unit (187 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
STRUCTURE OF THE STANDARD KINK TURN HMKT-7 AS STEM LOOP IN P212121 SPACE GROUP
Authors
:
L. Huang, D. M. J. Lilley
Date
:
05 Oct 15 (Deposition) - 25 May 16 (Release) - 06 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,E (1x)
Biol. Unit 2: D,F,G,H (1x)
Keywords
:
Rna, Kink Turn, Rna Motif
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Huang, J. Wang, D. M. J. Lilley
A Critical Base Pair In K-Turns Determines The Conformational Class Adopted, And Correlates With Biological Function.
Nucleic Acids Res. V. 44 5390 2016
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
1s: MAGNESIUM ION (MGs)
1t: MAGNESIUM ION (MGt)
1u: MAGNESIUM ION (MGu)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC6 (SOFTWARE)
12: BC7 (SOFTWARE)
13: BC9 (SOFTWARE)
14: CC1 (SOFTWARE)
15: CC2 (SOFTWARE)
16: CC3 (SOFTWARE)
17: CC5 (SOFTWARE)
18: CC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G A:3 , G A:4 , G A:5 , MG A:1026 , HOH A:2001
BINDING SITE FOR RESIDUE MG A1025
02
AC2
SOFTWARE
G A:2 , G A:3 , G A:4 , MG A:1025
BINDING SITE FOR RESIDUE MG A1026
03
AC3
SOFTWARE
G A:5 , G A:20
BINDING SITE FOR RESIDUE MG A1027
04
AC7
SOFTWARE
G C:20
BINDING SITE FOR RESIDUE MG C1025
05
AC9
SOFTWARE
G C:10
BINDING SITE FOR RESIDUE MG C1026
06
BC1
SOFTWARE
G B:2 , G B:3 , HOH B:2001
BINDING SITE FOR RESIDUE MG B1025
07
BC2
SOFTWARE
G B:3 , G B:4 , G B:5 , MG B:1027
BINDING SITE FOR RESIDUE MG B1026
08
BC3
SOFTWARE
G B:5 , MG B:1026 , HOH B:2002
BINDING SITE FOR RESIDUE MG B1027
09
BC4
SOFTWARE
G B:5
BINDING SITE FOR RESIDUE MG B1028
10
BC5
SOFTWARE
G E:10
BINDING SITE FOR RESIDUE MG E1025
11
BC6
SOFTWARE
G C:4 , G C:5
BINDING SITE FOR RESIDUE MG C1027
12
BC7
SOFTWARE
G B:10
BINDING SITE FOR RESIDUE MG B1029
13
BC9
SOFTWARE
G A:10
BINDING SITE FOR RESIDUE MG A1028
14
CC1
SOFTWARE
G E:5 , G E:20
BINDING SITE FOR RESIDUE MG E1026
15
CC2
SOFTWARE
G E:5
BINDING SITE FOR RESIDUE MG E1027
16
CC3
SOFTWARE
G E:3 , G E:4 , G E:5
BINDING SITE FOR RESIDUE MG E1028
17
CC5
SOFTWARE
A A:19 , G E:14
BINDING SITE FOR RESIDUE NA A1029
18
CC6
SOFTWARE
G A:14 , A E:19
BINDING SITE FOR RESIDUE NA A1030
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (187 KB)
Header - Asym.Unit
Biol.Unit 1 (89 KB)
Header - Biol.Unit 1
Biol.Unit 2 (89 KB)
Header - Biol.Unit 2
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