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Asym. Unit
Info
Asym.Unit (216 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN MYELOPEROXIDASE AT 1.7 ANGSTROMS RESOLUTION
Authors
:
L. Bonnefond, J. Cavarelli
Date
:
02 Oct 15 (Deposition) - 14 Oct 15 (Release) - 14 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Oxidoreductase, Heme-Dependent Peroxidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Bonnefond, J. Cavarelli
Crystal Structure Of Human Myeloperoxidase At 1. 7 Angstroms Resolution
To Be Published
[
close entry info
]
Hetero Components
(8, 27)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
4a: S-HYDROXYCYSTEINE (CSOa)
4b: S-HYDROXYCYSTEINE (CSOb)
5a: ALPHA-L-FUCOSE (FUCa)
5b: ALPHA-L-FUCOSE (FUCb)
6a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
6b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
7a: ALPHA-D-MANNOSE (MANa)
7b: ALPHA-D-MANNOSE (MANb)
8a: N-ACETYL-D-GLUCOSAMINE (NAGa)
8b: N-ACETYL-D-GLUCOSAMINE (NAGb)
8c: N-ACETYL-D-GLUCOSAMINE (NAGc)
8d: N-ACETYL-D-GLUCOSAMINE (NAGd)
8e: N-ACETYL-D-GLUCOSAMINE (NAGe)
8f: N-ACETYL-D-GLUCOSAMINE (NAGf)
8g: N-ACETYL-D-GLUCOSAMINE (NAGg)
8h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
CL
5
Ligand/Ion
CHLORIDE ION
4
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
5
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
6
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
7
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
8
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:32 , ASN C:326 , VAL C:327
BINDING SITE FOR RESIDUE CL A 602
02
AC2
SOFTWARE
MET A:87 , GLY A:90 , GLN A:91 , ASP A:94 , ASP A:98 , PHE A:99 , THR A:100 , HOH A:2125 , HOH A:2127 , HOH A:2128 , ARG C:239 , GLU C:242 , MET C:243 , THR C:329 , PHE C:332 , ARG C:333 , GLY C:335 , HIS C:336 , PHE C:365 , LEU C:417 , ARG C:424
BINDING SITE FOR RESIDUE HEM A 605
03
AC3
SOFTWARE
MET B:87 , GLY B:90 , GLN B:91 , ASP B:94 , ASP B:98 , PHE B:99 , THR B:100 , HOH B:2107 , HOH B:2116 , HOH B:2117 , ARG D:239 , GLU D:242 , MET D:243 , THR D:329 , PHE D:332 , ARG D:333 , GLY D:335 , HIS D:336 , PHE D:365 , LEU D:417 , ARG D:424
BINDING SITE FOR RESIDUE HEM B 605
04
AC4
SOFTWARE
TRP B:32 , ASN D:326 , VAL D:327 , TRP D:436
BINDING SITE FOR RESIDUE CL B 201
05
AC5
SOFTWARE
ASP A:96 , THR C:168 , PHE C:170 , ASP C:172 , SER C:174
BINDING SITE FOR RESIDUE CA C 601
06
AC6
SOFTWARE
TRP B:32 , BMA C:642 , HOH C:2323 , HOH C:2330 , HOH C:2331 , HOH C:2332 , PHE D:439 , LYS D:505 , FUC D:645
BINDING SITE FOR RESIDUE BMA C 644
07
AC7
SOFTWARE
ARG C:382 , THR C:544 , HOH C:2195
BINDING SITE FOR RESIDUE CL C 611
08
AC8
SOFTWARE
GLN C:201 , PHE C:213
BINDING SITE FOR RESIDUE CL C 612
09
AC9
SOFTWARE
ASP B:96 , THR D:168 , PHE D:170 , ASP D:172 , SER D:174
BINDING SITE FOR RESIDUE CA D 701
10
BC1
SOFTWARE
TRP A:32 , PHE C:439 , LYS C:505 , FUC C:645 , HOH C:2279 , HOH C:2333 , HOH C:2334 , BMA D:642 , HOH D:2342
BINDING SITE FOR RESIDUE BMA D 644
11
BC2
SOFTWARE
GLN D:201 , PHE D:213
BINDING SITE FOR RESIDUE CL D 612
12
BC3
SOFTWARE
ASN C:189 , ASN C:192 , LEU C:196 , ALA C:198 , VAL C:199 , GLN C:201 , HOH C:2080 , HOH C:2081 , HOH C:2318 , HOH C:2319
BINDING SITE FOR MONO-SACCHARIDE NAG C 620 BOUND TO ASN C 189
13
BC4
SOFTWARE
ASN C:225 , TRP C:369 , LEU C:373
BINDING SITE FOR MONO-SACCHARIDE NAG C 630 BOUND TO ASN C 225
14
BC5
SOFTWARE
LEU B:33 , ASN C:317 , SER C:319 , VAL C:320 , ARG C:504 , BMA C:644 , HOH C:2169 , HOH C:2278 , HOH C:2320 , HOH C:2322 , HOH C:2323 , HOH C:2324 , HOH C:2325 , HOH C:2326 , HOH C:2328 , HOH C:2329 , HOH C:2333 , HOH C:2334 , LYS D:308 , ARG D:438 , PHE D:439 , GLY D:441 , BMA D:644
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 640 THROUGH FUC C 645 BOUND TO ASN C 317
15
BC6
SOFTWARE
ASN D:189 , ASN D:192 , ALA D:198 , VAL D:199 , GLN D:201 , HOH D:2085 , HOH D:2086 , HOH D:2338
BINDING SITE FOR MONO-SACCHARIDE NAG D 620 BOUND TO ASN D 189
16
BC7
SOFTWARE
ASN D:225 , TRP D:369
BINDING SITE FOR MONO-SACCHARIDE NAG D 630 BOUND TO ASN D 225
17
BC8
SOFTWARE
LEU A:33 , LYS C:308 , ARG C:438 , PHE C:439 , GLY C:441 , BMA C:644 , HOH C:2159 , HOH C:2240 , HOH C:2241 , HOH C:2243 , HOH C:2277 , HOH C:2331 , HOH C:2332 , ASN D:317 , SER D:319 , VAL D:320 , BMA D:644 , HOH D:2189 , HOH D:2198 , HOH D:2339 , HOH D:2340 , HOH D:2341 , HOH D:2343 , HOH D:2344
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG D 640 THROUGH FUC D 645 BOUND TO ASN D 317
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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Info
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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wireframe 100
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Asym.Unit (216 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Biol.Unit 2 (106 KB)
Header - Biol.Unit 2
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