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5FGW
Biol. Unit 3
Info
Asym.Unit (173 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (45 KB)
Biol.Unit 3 (45 KB)
Biol.Unit 4 (46 KB)
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Title
:
STRUCTURE OF SDA1 NUCLEASE WITH BOUND ZINC ION
Authors
:
A. F. Moon, J. M. Krahn, L. Xun, M. J. Cuneo, L. C. Pedersen
Date
:
21 Dec 15 (Deposition) - 30 Mar 16 (Release) - 18 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta-Beta-Alpha Metal Finger Nuclease, Sequence Nonspecific Dna Binding, Metal Binding, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. F. Moon, J. M. Krahn, X. Lu, M. J. Cuneo, L. C. Pedersen
Structural Characterization Of The Virulence Factor Sda1 Nuclease From Streptococcus Pyogenes.
Nucleic Acids Res. V. 44 3946 2016
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
5s: ZINC ION (ZNs)
5t: ZINC ION (ZNt)
5u: ZINC ION (ZNu)
5v: ZINC ION (ZNv)
5w: ZINC ION (ZNw)
5x: ZINC ION (ZNx)
5y: ZINC ION (ZNy)
5z: ZINC ION (ZNz)
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
4
NA
-1
Ligand/Ion
SODIUM ION
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(11, 11)
Info
All Sites
01: AE6 (SOFTWARE)
02: AE7 (SOFTWARE)
03: AE8 (SOFTWARE)
04: AE9 (SOFTWARE)
05: AF1 (SOFTWARE)
06: AF2 (SOFTWARE)
07: AF3 (SOFTWARE)
08: AF4 (SOFTWARE)
09: AF5 (SOFTWARE)
10: AF6 (SOFTWARE)
11: AG3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AE6
SOFTWARE
SER C:294 , ASN D:211 , HOH D:429 , HOH D:442 , HOH D:447
binding site for residue ZN C 301
02
AE7
SOFTWARE
ASN C:211 , HOH C:433 , HOH C:447 , HOH C:449 , SER D:294
binding site for residue ZN C 302
03
AE8
SOFTWARE
ASP C:192 , HOH C:402 , HOH C:419
binding site for residue ZN C 303
04
AE9
SOFTWARE
HIS C:51 , HIS C:56 , ACT C:310 , HOH C:504
binding site for residue ZN C 304
05
AF1
SOFTWARE
HIS C:231 , HOH C:498 , HOH C:505 , HOH C:508
binding site for residue ZN C 305
06
AF2
SOFTWARE
HIS C:239 , TYR C:241 , HOH C:512
binding site for residue ZN C 306
07
AF3
SOFTWARE
ASP C:100 , SER C:105 , TYR C:248 , HOH C:412 , HOH C:425
binding site for residue EDO C 307
08
AF4
SOFTWARE
TRP C:127
binding site for residue CL C 308
09
AF5
SOFTWARE
GLU C:125 , GLU C:128 , ARG C:197 , HOH C:461
binding site for residue ACT C 309
10
AF6
SOFTWARE
HIS C:51 , HIS C:56 , ZN C:304
binding site for residue ACT C 310
11
AG3
SOFTWARE
SER C:294 , GLY D:188 , ILE D:190 , ASP D:192 , ARG D:197 , ASN D:202 , HOH D:405
binding site for residue EDO D 306
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
(0, 0)
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SCOP Domains
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Pfam Domains
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Chain C
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (173 KB)
Header - Asym.Unit
Biol.Unit 1 (44 KB)
Header - Biol.Unit 1
Biol.Unit 2 (45 KB)
Header - Biol.Unit 2
Biol.Unit 3 (45 KB)
Header - Biol.Unit 3
Biol.Unit 4 (46 KB)
Header - Biol.Unit 4
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