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Asym. Unit
Info
Asym.Unit (173 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (45 KB)
Biol.Unit 3 (45 KB)
Biol.Unit 4 (46 KB)
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Title
:
STRUCTURE OF SDA1 NUCLEASE WITH BOUND ZINC ION
Authors
:
A. F. Moon, J. M. Krahn, L. Xun, M. J. Cuneo, L. C. Pedersen
Date
:
21 Dec 15 (Deposition) - 30 Mar 16 (Release) - 18 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta-Beta-Alpha Metal Finger Nuclease, Sequence Nonspecific Dna Binding, Metal Binding, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. F. Moon, J. M. Krahn, X. Lu, M. J. Cuneo, L. C. Pedersen
Structural Characterization Of The Virulence Factor Sda1 Nuclease From Streptococcus Pyogenes.
Nucleic Acids Res. V. 44 3946 2016
[
close entry info
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Hetero Components
(5, 42)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
5s: ZINC ION (ZNs)
5t: ZINC ION (ZNt)
5u: ZINC ION (ZNu)
5v: ZINC ION (ZNv)
5w: ZINC ION (ZNw)
5x: ZINC ION (ZNx)
5y: ZINC ION (ZNy)
5z: ZINC ION (ZNz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
CL
5
Ligand/Ion
CHLORIDE ION
3
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
4
NA
2
Ligand/Ion
SODIUM ION
5
ZN
26
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(42, 42)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:294 , ASN B:211 , HOH B:430 , HOH B:431 , HOH B:436
binding site for residue ZN A 301
02
AC2
SOFTWARE
ASN A:211 , HOH A:426 , HOH A:436 , HOH A:441 , SER B:294
binding site for residue ZN A 302
03
AC3
SOFTWARE
HIS A:51 , HIS A:56 , HOH A:454 , HOH A:487 , HOH A:493
binding site for residue ZN A 303
04
AC4
SOFTWARE
SER A:120 , GLU A:125 , ASP A:192 , HOH A:401 , HOH A:419 , HOH A:423 , HOH A:464
binding site for residue ZN A 304
05
AC5
SOFTWARE
GLU A:125 , HOH A:409 , HOH A:435 , HOH A:485 , HOH A:495
binding site for residue ZN A 305
06
AC6
SOFTWARE
HIS A:95 , HOH A:492 , HIS D:95
binding site for residue ZN A 306
07
AC7
SOFTWARE
HIS A:231 , HOH A:486 , HOH A:490 , HOH A:497
binding site for residue ZN A 307
08
AC8
SOFTWARE
HIS A:239 , TYR A:241 , SER A:265 , HOH A:489 , HOH A:496
binding site for residue ZN A 308
09
AC9
SOFTWARE
GLY A:281
binding site for residue CL A 309
10
AD1
SOFTWARE
ASP A:64 , LYS A:243
binding site for residue CL A 310
11
AD2
SOFTWARE
ASN A:283 , LEU A:292 , SER A:293 , SER A:294 , HOH A:406 , HOH A:418 , TRP B:127 , ARG B:186
binding site for residue ACT A 311
12
AD3
SOFTWARE
TRP A:127 , ARG A:186 , HOH A:404 , ASN B:283 , LEU B:292 , SER B:293 , SER B:294
binding site for residue ACT A 312
13
AD4
SOFTWARE
HIS B:51 , HIS B:56 , ACT B:310 , HOH B:490
binding site for residue ZN B 301
14
AD5
SOFTWARE
SER B:120 , GLU B:125 , ASP B:192 , HOH B:412 , HOH B:413 , HOH B:448
binding site for residue ZN B 302
15
AD6
SOFTWARE
GLU B:125 , HOH B:406 , HOH B:467 , HOH B:479
binding site for residue ZN B 303
16
AD7
SOFTWARE
HIS B:155 , HOH D:477
binding site for residue ZN B 304
17
AD8
SOFTWARE
HIS B:231 , HOH B:441 , HOH B:493 , HOH B:495
binding site for residue ZN B 305
18
AD9
SOFTWARE
HIS B:239 , TYR B:241
binding site for residue ZN B 306
19
AE1
SOFTWARE
GLU B:76 , HOH B:483
binding site for residue ZN B 307
20
AE2
SOFTWARE
ASP B:152 , HOH B:487 , HOH B:499
binding site for residue ZN B 308
21
AE3
SOFTWARE
ASP B:64
binding site for residue CL B 309
22
AE4
SOFTWARE
HIS B:51 , HIS B:56 , ZN B:301
binding site for residue ACT B 310
23
AE5
SOFTWARE
GLU B:132 , ARG B:186 , HOH B:475 , HOH B:485
binding site for residue NA B 311
24
AE6
SOFTWARE
SER C:294 , ASN D:211 , HOH D:429 , HOH D:442 , HOH D:447
binding site for residue ZN C 301
25
AE7
SOFTWARE
ASN C:211 , HOH C:433 , HOH C:447 , HOH C:449 , SER D:294
binding site for residue ZN C 302
26
AE8
SOFTWARE
ASP C:192 , HOH C:402 , HOH C:419
binding site for residue ZN C 303
27
AE9
SOFTWARE
HIS C:51 , HIS C:56 , ACT C:310 , HOH C:504
binding site for residue ZN C 304
28
AF1
SOFTWARE
HIS C:231 , HOH C:498 , HOH C:505 , HOH C:508
binding site for residue ZN C 305
29
AF2
SOFTWARE
HIS C:239 , TYR C:241 , HOH C:512
binding site for residue ZN C 306
30
AF3
SOFTWARE
ASP C:100 , SER C:105 , TYR C:248 , HOH C:412 , HOH C:425
binding site for residue EDO C 307
31
AF4
SOFTWARE
TRP C:127
binding site for residue CL C 308
32
AF5
SOFTWARE
GLU C:125 , GLU C:128 , ARG C:197 , HOH C:461
binding site for residue ACT C 309
33
AF6
SOFTWARE
HIS C:51 , HIS C:56 , ZN C:304
binding site for residue ACT C 310
34
AF7
SOFTWARE
HIS D:51 , HIS D:56 , ACT D:308 , HOH D:501
binding site for residue ZN D 301
35
AF8
SOFTWARE
HOH B:446 , HOH B:486 , HIS D:155
binding site for residue ZN D 302
36
AF9
SOFTWARE
HIS D:231 , HOH D:503 , HOH D:505 , HOH D:507 , HOH D:508
binding site for residue ZN D 303
37
AG1
SOFTWARE
HIS D:239 , TYR D:241 , HOH D:504
binding site for residue ZN D 304
38
AG2
SOFTWARE
THR D:149 , ASP D:152
binding site for residue EDO D 305
39
AG3
SOFTWARE
SER C:294 , GLY D:188 , ILE D:190 , ASP D:192 , ARG D:197 , ASN D:202 , HOH D:405
binding site for residue EDO D 306
40
AG4
SOFTWARE
ASP D:64
binding site for residue CL D 307
41
AG5
SOFTWARE
HIS D:51 , HIS D:56 , ZN D:301
binding site for residue ACT D 308
42
AG6
SOFTWARE
GLU D:125 , HOH D:423
binding site for residue NA D 309
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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