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5FGU
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (174 KB)
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(1)
Title
:
STRUCTURE OF SDA1 NUCLEASE APOPROTEIN AS AN EGFP FIXED-ARM FUSION
Authors
:
A. F. Moon, J. M. Krahn, L. Xun, M. J. Cuneo, L. C. Pedersen
Date
:
21 Dec 15 (Deposition) - 30 Mar 16 (Release) - 18 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Beta-Beta-Alpha Metal Finger Nuclease, Sequence Nonspecific Dna Binding, Metal Binding Protein, Dna Binding Protein, Metal Binding
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. F. Moon, J. M. Krahn, X. Lu, M. J. Cuneo, L. C. Pedersen
Structural Characterization Of The Virulence Factor Sda1 Nuclease From Streptococcus Pyogenes.
Nucleic Acids Res. V. 44 3946 2016
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROX... (CR2a)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
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No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CR2
1
Mod. Amino Acid
{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
3
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
4
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:1179 , ARG A:1208 , ASN A:1215 , HOH A:1755
binding site for residue SO4 A 1401
02
AC2
SOFTWARE
LYS A:1130 , ASP A:1185 , ARG A:1186 , HOH A:1667
binding site for residue SO4 A 1402
03
AC3
SOFTWARE
GLY A:1188 , ALA A:1191 , ASP A:1192 , ASN A:1211 , EDO A:1409 , HOH A:1657 , HOH A:1745
binding site for residue SO4 A 1403
04
AC4
SOFTWARE
LYS A:41 , TYR A:1102 , SER A:1251 , GLN A:1374 , EDO A:1407
binding site for residue SO4 A 1404
05
AC5
SOFTWARE
VAL A:1351 , HIS A:1382 , THR A:1385
binding site for residue SO4 A 1405
06
AC6
SOFTWARE
VAL A:55 , PRO A:56 , TRP A:57 , PRO A:58 , HIS A:139 , HOH A:1540 , HOH A:1575 , HOH A:1593 , HOH A:1607
binding site for residue SO4 A 1406
07
AC7
SOFTWARE
TYR A:39 , LYS A:41 , SO4 A:1404
binding site for residue EDO A 1407
08
AC8
SOFTWARE
TYR A:1072 , ARG A:1073
binding site for residue EDO A 1408
09
AC9
SOFTWARE
LYS A:1130 , ASP A:1192 , GLY A:1196 , ARG A:1197 , PRO A:1198 , SO4 A:1403
binding site for residue EDO A 1409
10
AD1
SOFTWARE
HIS A:77 , ASN A:1067 , LYS A:1243
binding site for residue EDO A 1410
11
AD2
SOFTWARE
HIS A:148 , PHE A:165 , LYS A:166 , HOH A:1524 , HOH A:1683
binding site for residue ACT A 1411
12
AD3
SOFTWARE
ALA A:231 , ALA A:232 , ARG A:1274 , HOH A:1585
binding site for residue ACT A 1412
13
AD4
SOFTWARE
ASN A:1166 , ARG A:1186 , HOH A:1514 , HOH A:1667
binding site for residue ACT A 1413
14
AD5
SOFTWARE
LYS A:1168 , TYR A:1182
binding site for residue ACT A 1414
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (95 KB)
Header - Asym.Unit
Biol.Unit 1 (88 KB)
Header - Biol.Unit 1
Biol.Unit 2 (174 KB)
Header - Biol.Unit 2
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